R Observatory: Metrics for gpcp version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

gpcp

0.1.0Package record

Genomic Prediction of Cross Performance

0packages depend

5.6Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Christine NyagaCRAN page ↗

This function performs genomic prediction of cross performance using genotype and phenotype data. It processes data in several steps including loading necessary software, converting genotype data, processing phenotype data, fitting mixed models, and predicting cross performance based on weighted marker effects. For more information, see Labroo et al. (2023) doi:10.1007/s00122-023-04377-z.

Install

R (CRAN)Ubuntu (r2u)

install.packages("gpcp", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-gpcp

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

2NOTE11OK

Check messages

NOTEdependencies in R coder-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Namespace in Imports field not imported from:
  ‘BiocManager’
All declared Imports should be used.

CRAN check page ↗

Slowest check: 10.4 min · r-devel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTE2026-06-27
ERROR10 OK, 2 NOTE, 1 ERROR2026-06-21
NOTE11 OK, 2 NOTE2026-06-09
ERROR10 OK, 2 NOTE, 1 ERROR2026-06-08
NOTE11 OK, 2 NOTE2026-05-10

Show 6 earlier changesHide 6 earlier changes

ERROR10 OK, 2 NOTE, 1 ERROR2026-05-03
NOTE12 OK, 2 NOTE2026-04-22
ERROR11 OK, 2 NOTE, 1 ERROR2026-04-18
NOTE12 OK, 2 NOTE2026-04-16
ERROR10 OK, 2 NOTE, 2 ERROR2026-04-09
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.0

READMEYes · 352 wordsVignettesYes · 1 · staticNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 2
Examples that run: 100%2 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

Genomic Prediction of Cross Performance with gpcp

How these are measured

Downloads

5.6K

CRAN downloads in the past year

Rank #11,481 · ~15/day · ~463/mo

Releases R versions

Daily download trend is not available in this view yet.

32930 days

93190 days

5.6K1 year

Compare downloads with other packages →

Also on340 r2u

How downloads are counted

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Installing gpcp adds 25 packages (15 with compiled code, 16 MB of source tarballs). Heaviest: enhancer 2.3 MB, AGHmatrix 2.0 MB, Rcpp 1.8 MB. 2 more not on CRAN are not measured.

Depends (1)

R >= 2.10

Imports (10)

BiocManager Rcpp dplyr sommer AGHmatrix snpStats VariantAnnotationtoolsmagrittrmethods

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Christine Nyaga

Maintainer since 0.1.0 (2024), Author

Marlee Labroo

Author

Lukas Mueller

Author

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.1.0Latest
record
2024-11-06 · current release
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-11-06
Total releases: 1 / 2 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 2.10
Bundled data: 33 KB / 2 files
Download size: 89 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("gpcp")

Format

Nyaga, C., Labroo, M., & Mueller, L. (2024). gpcp: Genomic Prediction of Cross Performance (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.gpcp

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for gpcp version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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