R Observatory: Metrics for glyparse version 0.7.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

glyparse

0.7.1

Parsing Glycan Structure Text Representations

1packages depend

4.2Kdownloads / year

95.1%test coverage

13/13checks pass

Overview

About

Maintained by Bin FuFirst published 2025-11-049 releasesCRAN page ↗GitHub ↗

Provides functions to parse glycan structure text representations into 'glyrepr' glycan structures. Currently, it supports StrucGP-style, pGlyco-style, IUPAC-condensed, IUPAC-extended, IUPAC-short, IUPAC-compact, WURCS, LINUCS, Linear Code, GlycoCT, and KCF format. It also provides an automatic parser to detect the format and parse the structure string.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("glyparse", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("glycoverse/glyparse")

Development version from glycoverse/glyparse. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-glyparse

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-glyparse

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-glyparse

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.2 min · r-release-macos-x86_64

Code health

Yes

Tests · ratio 0.62

95.1%

Coverage · measured lines

100%

Documentation · exports

9

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 169 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

4.2K

CRAN downloads in the past year

Rank #6,060 · ~11/day · ~349/mo

Releases R versions

Daily download trend is not available in this view yet.

28130 days

1.3K90 days

4.2K1 year

Compare downloads with other packages →

Also on118 r2u25 autocran

Repository

GitHub ↗ glycoverse/glyparse

0Stars

0Forks

1Open issues

0Open PRs

25Releases

224Commits

2Contributors

224 commits · Last activity 2026-08-17

Releases over time

2025-08-19 · 112026-07-09 · 25

Repository practices

Upstream repositoryBeta

7 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/glycoverse/glyparse on 2026-08-23.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Show all practices

Coverage (1)

Codecov

Governance and community (2)

Issue templatesSupport guide

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1

Imports (9)

checkmate cli dplyr glyrepr igraph purrr (>= 1.0.0)rlang rstackdeque stringr

LinkingTo (0)

none

Suggests (4)

knitr rmarkdown glue testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

glydraw

Code & Tests

People & History

People (1)

Maintainer (1)

Bin Fu

Author, Maintainer, Copyright holder

Authors (1)

Bin Fu

Author, Maintainer, Copyright holder

Copyright holders (1)

Bin Fu

Author, Maintainer, Copyright holder

Package Timeline

9 releases. Pick two to compare their code metrics. R releases are shown for context.

0.7.1Latest
2026-07-08 · current release · diff ↗
0.7.0
2026-07-06 · diff ↗
0.6.1
2026-06-20 · diff ↗
0.6.0
2026-04-29 · diff ↗
R
R 4.6.0 released · 2026-04-24
0.5.7
2026-03-14 · diff ↗
0.5.6
2026-02-24 · diff ↗
0.5.5
2026-02-04 · diff ↗
0.5.4
2026-01-27 · diff ↗
0.5.3
2025-11-04
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-11-04
Total releases: 9 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1
Download size: 83 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("glyparse")

Format

Fu, B. (2026). glyparse: Parsing Glycan Structure Text Representations (Version 0.7.1) [Computer software]. https://doi.org/10.32614/CRAN.package.glyparse

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for glyparse version 0.7.1 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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