R Observatory: Metrics for ggrisk version 1.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2026-07-10. Its history is shown below.

Reason: requires archived package 'tmcn'

Details below reflect version 1.3, its last release before removal.

ggrisk

1.3

Risk Score Plot for Cox Regression

0packages depend

3.4Kdownloads / year

–test coverage

–checks pass

Overview

About

Maintained by Jing Zhang3 releasesCRAN page ↗GitHub ↗

The risk plot may be one of the most commonly used figures in tumor genetic data analysis. We can conclude the following two points: Comparing the prediction results of the model with the real survival situation to see whether the survival rate of the high-risk group is lower than that of the low-level group, and whether the survival time of the high-risk group is shorter than that of the low-risk group. The other is to compare the heat map and scatter plot to see the correlation between the predictors and the outcome.

Install

R (source archive)pak (dev)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/ggrisk/ggrisk_1.3.tar.gz"
pkgFile <- "ggrisk_1.3.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.3) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("yikeshu0611/ggrisk")

Development version from yikeshu0611/ggrisk. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ggrisk

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-ggrisk

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

10

Dependencies · direct

Check history

NOTE2026-06-09
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
10 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 94%
Return-value docs: 100%
References docs: 0%

Downloads

3.4K

CRAN downloads in the past year

Rank #18,214 · ~9/day · ~281/mo

Releases R versions

Daily download trend is not available in this view yet.

030 days

60090 days

3.4K1 year

Compare downloads with other packages →

Also on96 r2u

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (10)

ggplot2survivalegg do set cutoffgridrms nomogramFormula reshape2

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Jing Zhang

Author, Maintainer

Authors (2)

Jing Zhang

Author, Maintainer

Zhi Jin

Author

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

archivedRemoved from CRAN
2026-07-10
requires archived package 'tmcn'
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.3
2021-08-09 · diff ↗
unarchivedReturned to CRAN
2021-08-09
archivedRemoved from CRAN
2021-07-30
requires archived package 'fastStat'
R
R 4.1.0 released · 2021-05-18
1.2
2020-08-10 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.0
2020-02-09
R
R 3.6.0 released · 2019-04-26

Package metadata

Total releases: 3
License: GPL-2 OSI
Minimum R: ≥ 2.10
Bundled data: 8.4 KB / 1 file
Download size: 19 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ggrisk")

Format

Zhang, J., & Jin, Z. (n.d.). ggrisk: Risk Score Plot for Cox Regression (Version 1.3) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=ggrisk

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ggrisk version 1.3 [Data set]. HJJB, LLC. Data release v2026-08-11. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-11, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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