R Observatory: Metrics for gfpop version 1.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

gfpop

1.1.2Package record

Graph-Constrained Functional Pruning Optimal Partitioning

0packages depend

341downloads / year

56.8%test coverage

13/13flavors OK

Overview

About

Maintained by Vincent RungeCRAN page ↗

Penalized parametric change-point detection by functional pruning dynamic programming algorithm. The successive means are constrained using a graph structure with edges defining the nature of the changes These changes can be unconstrained (type std), up or down constrained (type up and down) or constrained by a minimal size jump (type abs). The type null means that the graph allows us to stay on the same segment. To each edge we can associate some additional properties: a minimal gap size, a penalty, some robust parameters (K,a) for biweight (K) and Huber losses (K and a). The user can also constrain the inferred means to lie between some minimal and maximal values. Data is modeled by a cost with possible use of a robust loss, biweight and Huber (see edge parameters K and a). These costs should have a quadratic, log-linear or a log-log representation. This includes quadratic Gaussian cost (type = 'mean'), log-linear cost (type = 'variance', 'poisson' or 'exp') and log-log cost (type = 'negbin'). More details in the paper published in the Journal of Statistical Software: doi:10.18637/jss.v106.i06.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("gfpop", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-gfpop

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-gfpop

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-gfpop

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 5.4 min · r-release-macos-x86_64

Status changes

OK13 OKNow
OK6 OK2026-09-28

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.1.2

READMEYes · 861 wordsVignettesYes · 2 · dynamicNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Cites a JSS article

Help pages: 16
Examples that run: 100%10 run in a plain check
Exported functions with examples: 91%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 13%

Vignettes (2)

How these are measured

Downloads

341

CRAN downloads in the past year

Rank #25,329 · ~1/day · ~28/mo

Releases R versions

Daily download trend is not available in this view yet.

32530 days

32590 days

3411 year

Compare downloads with other packages →

Also on293 r2u4 autocran

How downloads are counted

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing gfpop adds 1 package (1 with compiled code, 1.8 MB of source tarballs). Heaviest: Rcpp 1.8 MB.

Depends (1)

R >= 3.5.0

Imports (1)

Rcpp

LinkingTo (1)

Rcpp

Suggests (6)

knitr data.table testthat rmarkdown ggplot2 penaltyLearning

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (9)

Vincent Runge

Author, Maintainer since 1.0.0 (2020)

Fatemeh Afghah

Author

Paul Fearnhead

Author

Daniel Grose

Author · added in 1.0.3

Author

Author

Author

Contributor

Contributor

Releases (7)

Pick two releases to compare their code metrics.

unarchivedReturned to CRAN
2026-09-27
1.1.2Latest
record
2026-09-27 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
archivedRemoved from CRAN
2024-03-29
policy violation On Internet access
R
R 4.3.0 released · 2023-04-21
1.1.1
record
2023-03-27 · diff ↗ ·
added 2 exports
print.gfpop, summary.gfpop
R
R 4.2.0 released · 2022-04-22
1.1.0
record
2022-03-10 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.0.3
record
2021-02-17 · diff ↗
1.0.2
record
2020-12-01 · diff ↗
1.0.1
record
2020-11-30 · diff ↗
1.0.0
record
2020-11-25
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-11-25
Total releases: 7 / 6 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Bundled data: 1.7 MB / 4 files
Download size: 2.1 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("gfpop")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.18637/jss.v106.i06.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for gfpop version 1.1.2 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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