This package was removed from CRAN on 2024-12-04. Its history is shown below.

Reason: from policy violation. On Internet access

Details below reflect version 1.0.1, its last release before removal.

genular

1.0.1

'Genular' Database API

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Ivan Tomic2 releasesCRAN page ↗GitHub ↗

Provides an interface to the 'Genular' database API (https://genular.atomic-lab.org), allowing efficient retrieval and integration of genomic, proteomic, and single-cell data. It supports operations like fetching gene annotations, cell expression profiles, and other information as defined in the 'Genular' database, enabling seamless incorporation of biological data into R workflows. With functions tailored for bioinformatics and machine learning, the package facilitates exploration of cellular heterogeneity, gene-disease relationships, and pathway analysis, streamlining multi-omics data analysis.

Install

R (source archive)pak (dev)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/genular/genular_1.0.1.tar.gz"
pkgFile <- "genular_1.0.1.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.0.1) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("atomiclaboratory/genular-database")

Development version from atomiclaboratory/genular-database. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-genular

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-genular

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Documentation

READMEYes · 152 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 27%
Documented parameters: 85%
Return-value docs: 100%
References docs: 0%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on85 r2u11 autocran

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.4.0

Imports (5)

httr jsonlite dplyr tidyrstats

LinkingTo (0)

none

Suggests (3)

plyr purrr ggplot2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

R 1,521 (69%)Rd 688 (31%)

Code characteristics

Cyclomatic complexity: 7.5 median / 19 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

12 11 exported

Complexity

9.5 avg / 19 max

Call network

12 nodes / 11 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (3)

Maintainer (1)

Ivan Tomic

Author, Maintainer, Copyright holder

Authors (3)

Ivan Tomic

Author, Maintainer, Copyright holder

Adriana Tomic

Author, Contributor, Copyright holder, Funder

Stephanie Hao

Author

Contributors (1)

Adriana Tomic

Author, Contributor, Copyright holder, Funder

Ivan Tomic

Author, Maintainer, Copyright holder

Adriana Tomic

Author, Contributor, Copyright holder, Funder

Funders (1)

Adriana Tomic

Author, Contributor, Copyright holder, Funder

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.5.0 released · 2025-04-11
archivedRemoved from CRAN
2024-12-04
from policy violation On Internet access
1.0.1
2024-10-19 · diff ↗
1.0.0
2024-10-10
R
R 4.4.0 released · 2024-04-24

Package metadata

Total releases: 2
License: GPL-3 OSI
Minimum R: ≥ 3.4.0
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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