R Observatory: Metrics for genesysr version 2.2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

genesysr

2.2.0Package record

Genesys PGR Client

0packages depend

3.3Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Matija ObrezaCRAN page ↗Repository ↗Issues ↗

Access data on plant genetic resources from genebanks around the world published on Genesys (https://www.genesys-pgr.org). Your use of data is subject to terms and conditions available at https://www.genesys-pgr.org/content/legal/terms.

Changes in 2.2.0

Upgrade to Genesys API v2

From NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("genesysr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-genesysr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-genesysr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-genesysr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.4 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.2.0

READMEYes · 96 wordsVignettesYes · 2 · staticNEWSYes · 100% structured · mentions 2.2.0Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 36 (8 internal)
Examples that run: 23%3 run in a plain check · 10 never run
Exported functions with examples: 46%
Documented parameters: 100%
Return-value docs: 36%
Help pages citing references: 0%

Vignettes (2)

genesysr Tutorial HTML
Validating passport data HTML

How these are measured

Downloads

3.3K

CRAN downloads in the past year

Rank #10,874 · ~9/day · ~276/mo

Releases R versions

Daily download trend is not available in this view yet.

38230 days

96590 days

3.3K1 year

Compare downloads with other packages →

Also on87 r2u1 autocran

How downloads are counted

Repository

gitlab.croptrust.org/genesys-pgr/genesysr ↗

0Stars

0Forks

1Open issues

0Open PRs

0Releases

45Commits

2Commit identities

45 commits · Last activity 2025-08-19

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: GitHub only
Median days to close, 50 most recently updated closed PRs: GitHub only

How these are measured

PracticesBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against gitlab.croptrust.org/genesys-pgr/genesysr on 2026-10-21.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdrevdep/

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing genesysr adds 32 packages (19 with compiled code, 11 MB of source tarballs). Heaviest: openssl 1.1 MB, jsonlite 1.0 MB, vctrs 1.0 MB.

Depends (1)

R >= 3.1.0

Imports (5)

httr2 jsonlite dplyr readr magrittr

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (3)

Matija Obreza

Author, Maintainer since 0.9.1 (2018)

Nora Castaneda

Contributor

Global Crop Diversity Trust

Copyright holder

Releases (9)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
2.2.0Latest
record
2025-08-19 · current release · diff ↗ ·
removed 2 exports
api1_url, fetch_accessions

added 3 exports
SELECT_ALL_FIELDS, SELECT_GEO_FIELDS, SELECT_INFO_FIELDS
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
2.1.1
record
2024-02-23 · diff ↗
2.1.0
record
2023-10-13 · diff ↗
2.0.0
record
2023-07-19 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.1.0
record
2023-02-15 · diff ↗ ·
added 4 exports
filter_INSTCODE, list_crops, list_institutes, list_species
1.0.1
record
2022-12-04 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.0.0
record
2019-11-22 · diff ↗ ·
removed 1 export
api_url

added 10 exports
api1_url, api2_url, check_country, check_landorsea, check_taxonomy, download_mcpd, download_pdci, filter_GENUS, filter_SPECIES, get_accessions
0.9.2
record
2019-09-02 · diff ↗
R
R 3.6.0 released · 2019-04-26

Show 2 earlier eventsHide 2 earlier events

0.9.1
record
2018-06-14
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-06-14
Total releases: 9 / 8 yrs
License: Apache License 2.0 OSI
Minimum R: ≥ 3.1.0
Download size: 27 KB

Appears in task views

Agricultural Science

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("genesysr")

Format

Obreza, M., Castaneda, N., & Global Crop Diversity Trust, . (2025). genesysr: Genesys PGR Client (Version 2.2.0) [Computer software]. https://doi.org/10.32614/CRAN.package.genesysr

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for genesysr version 2.2.0 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →