R Observatory: Metrics for gcerisk version 19.05.24

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

gcerisk

19.05.24Package record

Generalized Competing Event Model

0packages depend

2.9Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Hanjie ShenCRAN page ↗

Generalized competing event model based on Cox PH model and Fine-Gray model. This function is designed to develop optimized risk-stratification methods for competing risks data, such as described in: 1. Carmona R, Gulaya S, Murphy JD, Rose BS, Wu J, Noticewala S,McHale MT, Yashar CM, Vaida F, and Mell LK (2014) DOI:10.1016/j.ijrobp.2014.03.047. 2. Carmona R, Zakeri K, Green G, Hwang L, Gulaya S, Xu B, Verma R, Williamson CW, Triplett DP, Rose BS, Shen H, Vaida F, Murphy JD, and Mell LK (2016) DOI:10.1200/JCO.2015.65.0739. 3. Lunn, Mary, and Don McNeil (1995) DOI:10.2307/2532940.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("gcerisk", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-gcerisk

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-gcerisk

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-gcerisk

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Hanjie Shen <shenhanjie0418@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Hanjie",
                      family = "Shen",
                      role = c("aut", "cre"),
                      email = "shenhanjie0418@gmail.com"),
               person(given = "Ruben",
                      family = "Carmona",
                      role = "aut",
                      email = "ruben.carmona13@gmail.com"),
               person(given = "Loren",
                      family = "Mell",
                      role = "aut",
                      email = "lmell@ucsd.edu"))
as necessary.

CRAN check page ↗

Slowest check: 2.1 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 19.05.24

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 3
Examples that run: 100%2 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 67%

How these are measured

Downloads

2.9K

CRAN downloads in the past year

Rank #12,820 · ~8/day · ~246/mo

Releases R versions

Daily download trend is not available in this view yet.

32230 days

88790 days

2.9K1 year

Compare downloads with other packages →

Also on87 r2u1 autocran106 c2d4u

How downloads are counted

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Installing gcerisk adds 18 packages (8 with compiled code, 14 MB of source tarballs). Heaviest: ggplot2 6.0 MB, isoband 1.5 MB, farver 1.2 MB.

Depends (3)

survivalcmprsk ggplot2

Imports (1)

stats

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (3)

Hanjie Shen

Ruben Carmona

Loren Mell

Maintainer since 16.1.1 (2016)

Releases (7)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
19.05.24Latest
record
2019-05-23 · current release · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
18.02.22
record
2018-02-22 · diff ↗
17.10.17
record
2017-10-18 · diff ↗
17.8.7
record
2017-08-08 · diff ↗
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
16.1.3
record
2016-04-28 · diff ↗

Show 3 earlier eventsHide 3 earlier events

16.1.2
record
2016-03-05 · diff ↗
16.1.1
record
2016-02-04
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2016-02-04
Total releases: 7 / 10 yrs
License: GPL (>= 2) OSI
Bundled data: 13 KB / 1 file
Download size: 21 KB

Appears in task views

Survival Analysis

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("gcerisk")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for gcerisk version 19.05.24 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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