R Observatory: Metrics for gapmap version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

gapmap

1.0.0

Drawing Gapped Cluster Heatmaps with 'ggplot2'

1packages depend

9.7Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Evan BiederstedtFirst published 2014-09-116 releasesCRAN page ↗GitHub ↗

The gap encodes the distance between clusters and improves interpretation of cluster heatmaps. The gaps can be of the same distance based on a height threshold to cut the dendrogram. Another option is to vary the size of gaps based on the distance between clusters.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("gapmap", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("evanbiederstedt/gapmap")

Development version from evanbiederstedt/gapmap. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-gapmap

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-gapmap

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-gapmap

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.7 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

3

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 81 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 97%
Return-value docs: 100%
References docs: 0%

Downloads

9.7K

CRAN downloads in the past year

Rank #7,155 · ~27/day · ~808/mo

Releases R versions

Daily download trend is not available in this view yet.

20530 days

1.2K90 days

9.7K1 year

Compare downloads with other packages →

Also on117 r2u13 autocran

Repository

GitHub ↗ evanbiederstedt/gapmap

2Stars

0Forks

0Open issues

0Open PRs

2Releases

14Commits

1Contributors

14 commits · Last activity 2024-01-22

Stars over time

2024-11-14 · 22026-07-07 · 2

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/evanbiederstedt/gapmap on 2026-08-16.

Continuous integration (1)

Travis CI

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (2)

ggplot2 reshape2

Imports (1)

grid

LinkingTo (0)

none

Suggests (4)

knitr dendsort RColorBrewer rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

dendsort

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Evan Biederstedt

Maintainer, Author · added in 0.1.0

Authors (2)

Evan Biederstedt

Maintainer, Author · added in 0.1.0

Ryo Sakai

Author

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.0Latest
2024-01-22 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.1.0
2021-04-19 · diff ↗
unarchivedReturned to CRAN
2021-04-19
R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2020-03-07
check problems were not corrected despite reminders
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
0.0.4
2016-12-05 · diff ↗
R
R 3.3.0 released · 2016-05-03

Show 5 earlier events

0.0.3
2015-11-16 · diff ↗
R
R 3.2.0 released · 2015-04-16
0.0.2
2014-09-29 · diff ↗
0.0.1
2014-09-11
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2014-09-11
Total releases: 6 / 12 yrs
License: GPL-2 | GPL-3 OSI
Bundled data: 33 KB / 1 file
Download size: 2.0 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("gapmap")

Format

Biederstedt, E., & Sakai, R. (2024). gapmap: Drawing Gapped Cluster Heatmaps with 'ggplot2' (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.gapmap

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for gapmap version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-08-17. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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