R Observatory: Metrics for gapmap version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

gapmap

1.0.0Package record

Drawing Gapped Cluster Heatmaps with 'ggplot2'

0packages dependsuggested by 1

8.7Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Evan BiederstedtCRAN page ↗GitHub ↗Issues ↗

The gap encodes the distance between clusters and improves interpretation of cluster heatmaps. The gaps can be of the same distance based on a height threshold to cut the dendrogram. Another option is to vary the size of gaps based on the distance between clusters.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("gapmap", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("evanbiederstedt/gapmap")

Development version from evanbiederstedt/gapmap. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-gapmap

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-gapmap

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-gapmap

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.6 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.0

READMEYes · 81 wordsVignettesYes · 2 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 22 (15 internal)includes a package overview page
Examples that run: 100%1 run in a plain check
Exported functions with examples: 5%
Documented parameters: 97%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (2)

How these are measured

Downloads

8.7K

CRAN downloads in the past year

Rank #9,976 · ~24/day · ~727/mo

Releases R versions

Daily download trend is not available in this view yet.

38630 days

99990 days

8.7K1 year

Compare downloads with other packages →

Also on72 r2u5 autocran

How downloads are counted

Repository

evanbiederstedt/gapmap ↗Account: evanbiederstedt

2Stars

0Forks

0Open issues

0Open PRs

2Releases

14Commits

1Commit identities

14 commits · Last activity 2024-01-22

Responsiveness

not measured

Stars over time

2024-11-14 · 22026-07-07 · 2

How these are measured

PracticesBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/evanbiederstedt/gapmap on 2026-10-18.

Continuous integration (1)

Travis CI (config file)

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Installing gapmap adds 23 packages (12 with compiled code, 27 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, Rcpp 1.8 MB.

Depends (2)

ggplot2 reshape2

Imports (1)

grid

LinkingTo (0)

none

Suggests (4)

knitr dendsort RColorBrewer rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

dendsort

How these are counted

Code & Tests

Datasets

People & History

People (2)

Evan Biederstedt

Maintainer since 0.1.0 (2021), Author · added in 0.1.0

Ryo Sakai

Author

Previously maintained by Ryo Sakai (0.0.1 to 0.0.4).

Releases (6)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.0Latest
record
2024-01-22 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
unarchivedReturned to CRAN
2021-04-19
0.1.0
record
2021-04-19 · diff ↗
R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2020-03-07
check problems were not corrected despite reminders
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
0.0.4
record
2016-12-05 · diff ↗
R
R 3.3.0 released · 2016-05-03

Show 5 earlier eventsHide 5 earlier events

0.0.3
record
2015-11-16 · diff ↗
R
R 3.2.0 released · 2015-04-16
0.0.2
record
2014-09-29 · diff ↗
0.0.1
record
2014-09-11
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2014-09-11
Total releases: 6 / 12 yrs
License: GPL-2 | GPL-3 OSI
Bundled data: 33 KB / 1 file
Download size: 2.0 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("gapmap")

Format

Biederstedt, E., & Sakai, R. (2024). gapmap: Drawing Gapped Cluster Heatmaps with 'ggplot2' (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.gapmap

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for gapmap version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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