R Observatory: Metrics for foieGras version 0.7-6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2022-12-12. Its history is shown below.

Reason: requires archived package 'trip'

Details below reflect version 0.7-6, its last release before removal.

foieGras

0.7-6Package record

Fit Continuous-Time State-Space and Latent Variable Models for Quality Control of Argos Satellite (and Other) Telemetry Data and for Estimating Movement Behaviour

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Ian JonsenCRAN page ↗GitHub ↗

Fits continuous-time random walk and correlated random walk state-space models for quality control animal tracking data ('Argos', processed light-level 'geolocation', 'GPS'). Template Model Builder ('TMB') is used for fast estimation. The 'Argos' data can be: (older) least squares-based locations; (newer) Kalman filter-based locations with error ellipse information; or a mixture of both. The models estimate two sets of location states corresponding to: 1) each observation, which are (usually) irregularly timed; and 2) user-specified time intervals (regular or irregular). Latent variable models are provided to estimate move persistence along tracks as an index of behaviour. Track simulation functions are provided. 'Jonsen I', 'McMahon CR', 'Patterson TA', 'Auger-Méthé M', 'Harcourt R', 'Hindell MA', 'Bestley S' (2019) Movement responses to environment: fast inference of variation among southern elephant seals with a mixed effects model. Ecology 100:e02566 doi:10.1002/ecy.2566.

Install

R (source archive)pak (dev)

url <- "https://cran.r-project.org/src/contrib/Archive/foieGras/foieGras_0.7-6.tar.gz"
pkgFile <- "foieGras_0.7-6.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.7-6) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ianjonsen/foieGras")

Development version from ianjonsen/foieGras. Installs pak first if it is not already available.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.7-6

READMEYes · 580 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · does not mention 0.7-6Citation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 33 (8 internal)includes a package overview page
Examples that run: 100%16 run in a plain check
Exported functions with examples: 77%
Documented parameters: 98%
Return-value docs: 54%
Help pages citing references: 9%

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on281 r2u103 c2d4u

How downloads are counted

Dependencies

Declared dependencies

26 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.6.0

Imports (19)

tibble ggplot2 lubridate TMB (>= 1.7.15)sf stringr tidyr purrr dplyr (>= 1.0.0)trip assertthat patchwork future furrr CircStats mvtnorm tmvtnormparallellifecycle

LinkingTo (2)

TMB RcppEigen

Suggests (6)

testthat covr knitr rmarkdown rgeos rworldmap

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Ian Jonsen

Toby Patterson

Author, Contributor

Releases (8)

Pick two releases to compare their code metrics.

R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2022-12-12
requires archived package 'trip'
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.7-6
record
2021-04-26 · diff ↗
0.7-5
record
2021-04-24 · diff ↗ ·
added 5 exports
mpm_control, rtnorm, sim, simfit, ssm_control
0.6-9
record
2020-07-22 · diff ↗ ·
removed 3 exports
mpmf, prefilter, sfilter
0.6-7
record
2020-06-18 · diff ↗
R
R 4.0.0 released · 2020-04-24
0.4.0
record
2019-10-07 · diff ↗ ·
removed 2 exports
extract, pluck

added 6 exports
emf, fit_mpm, fmap, join, mpmf, osar
0.2.2
record
2019-07-03 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.2.1
record
2019-04-04 · diff ↗
0.2.0
record
2019-04-02
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2019-04-02
Total releases: 8 / 7 yrs
License: MIT + file LICENSE OSI · relicensed from AGPL-3 in 0.4.0
Minimum R: ≥ 3.6.0
Bundled data: 70 KB / 6 files

Cite

Cite this package

Run in R for the authors' entry:

citation("foieGras")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1186/s40462-020-00217-7, 10.1002/ecy.2566, 10.5281/zenodo.3899972.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for foieGras version 0.7-6 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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