R Observatory: Metrics for fmri version 1.9.12.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

fmri

1.9.12.1Package record

Analysis of fMRI Experiments

1packages depend

4.9Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Karsten TabelowCRAN page ↗Website ↗

Contains R-functions to perform an fMRI analysis as described in Polzehl and Tabelow (2019) DOI:10.1007/978-3-030-29184-6, Tabelow et al. (2006) DOI:10.1016/j.neuroimage.2006.06.029, Polzehl et al. (2010) DOI:10.1016/j.neuroimage.2010.04.241, Tabelow and Polzehl (2011) DOI:10.18637/jss.v044.i11.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("fmri", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-fmri

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-fmri

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-fmri

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.6 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
NOTE12 OK, 1 NOTE2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.9.12.1

READMEYes · 85 wordsVignettesNoNEWSNoCitation fileYes · cites a publicationWebsiteYes

Cites a JSS article

Help pages: 36
Examples that run: 35%9 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran) · 15 never run · 1 hold no code
Exported functions with examples: 71%
Documented parameters: 97%
Return-value docs: 100%
Help pages citing references: 64%

Also includes 1 demo script (run with demo())

How these are measured

Downloads

4.9K

CRAN downloads in the past year

Rank #5,973 · ~13/day · ~407/mo

Releases R versions

Daily download trend is not available in this view yet.

59230 days

1.4K90 days

4.9K1 year

Compare downloads with other packages →

Also on370 r2u7 autocran147 c2d4u

How downloads are counted

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Installing fmri adds 14 packages (7 with compiled code, 18 MB of source tarballs). Heaviest: oro.nifti 5.0 MB, metafor 4.8 MB, mathjaxr 3.0 MB.

Depends (1)

R >= 3.3.0

Imports (10)

grDevicesgraphicsstatsutilsnlmeparallelmetaformethodsaws oro.nifti

LinkingTo (0)

none

Suggests (4)

tcltktkrplot fastICA adimpro

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Imports 1

Depends, Imports or LinkingTo, most downloaded first

TCIU

How these are counted

Code & Tests

Datasets

People & History

People (4)

Karsten Tabelow

Author, Maintainer · added in 1.2-2

Joerg Polzehl

Author · added in 1.2-2

Dames Sibylle

Contributor · added in 1.7-2

Brandon Whitcher

Contributor · added in 1.5-1

Maintainer since 1.0 (2006)

Listed in earlier versions (1)

Karsten Tabelow Joerg Polzehl

no longer listed · 1.0 to 1.2-0

Releases (28)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.9.12.1Latest
record
2024-07-24 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
1.9.12
record
2023-09-06 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.9.11
record
2023-03-10 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.9.6
record
2021-01-12 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.9.3
record
2020-02-25 · diff ↗ ·
added 2 exports
condensefMRI, expandfMRI
unarchivedReturned to CRAN
2019-11-15
1.9.2.1
record
2019-11-15 · diff ↗
archivedRemoved from CRAN
2019-11-09
installation problems were not corrected in time Attempted use of Fortran OpenMP without specifying Fortran to link
1.9
record
2019-05-11 · diff ↗ ·
removed 2 exports
extract.data, fmri.gui

added 15 exports
extractData, setmask, sincfilter, slicetiming, fmri.searchlight, fmri.cluster, getSearchlightPattern, fmri.sICA, ICAfingerprint, plot.fmriICA, fmri.sgroupICA, plot.fmrigroupICA, plot.fmripvalue, gen_fmridata, niftiImage2fmri

Show 41 earlier eventsHide 41 earlier events

R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.7-2
record
2016-09-15 · diff ↗ ·
added 3 exports
fmri.designG, fmri.lmePar, fmri.metaPar
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
1.5-1
record
2014-06-18 · diff ↗ ·
added 2 exports
oro2fmri, fmri2oro
R
R 3.1.0 released · 2014-04-10
1.5-0
record
2013-06-12 · diff ↗ ·
added 1 export
plot.fmrisegment
R
R 3.0.0 released · 2013-04-03
1.4-8
record
2012-06-11 · diff ↗
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
1.4-6
record
2011-10-24 · diff ↗
1.4-5
record
2011-06-15 · diff ↗
R
R 2.13.0 released · 2011-04-13
1.4-4
record
2011-03-08 · diff ↗
1.4-3
record
2011-01-26 · diff ↗
1.4-2
record
2010-11-10 · diff ↗
R
R 2.12.0 released · 2010-10-15
R
R 2.11.0 released · 2010-04-22
1.4-1
record
2010-04-07 · diff ↗
1.4-0
record
2010-02-23 · diff ↗ ·
removed 2 exports
ngca, fmriica
R
R 2.10.0 released · 2009-10-26
R
R 2.9.0 released · 2009-04-17
1.3
record
2009-04-14 · diff ↗ ·
added 2 exports
fmri.detrend, fmri.gui
R
R 2.8.0 released · 2008-10-20
1.2-6
record
2008-05-19 · diff ↗ ·
added 1 export
cutroi
R
R 2.7.0 released · 2008-04-22
1.2-5
record
2008-03-28 · diff ↗ ·
added 1 export
fmriica
1.2-3
record
2007-11-23 · diff ↗ ·
added 1 export
write.NIFTI
R
R 2.6.0 released · 2007-10-03
1.2-2
record
2007-09-10 · diff ↗
R
R 2.5.0 released · 2007-04-24
1.2-0
record
2007-04-23 · diff ↗ ·
added 1 export
extract.data
1.1-3
record
2007-03-26 · diff ↗
1.1-1
record
2007-03-09 · diff ↗ ·
added 1 export
ngca
R
R 2.4.0 released · 2006-10-03
1.01
record
2006-08-31 · diff ↗ ·
added 2 exports
read.DICOM, read.NIFTI
1.0
record
2006-06-06
R
R 2.3.0 released · 2006-04-24

Package metadata

First published: 2006-06-06
Total releases: 28 / 20 yrs
License: GPL (>= 2) OSI
Copyright: This package is Copyright (C) 2006-2020 Weierstrass Institute for Applied Analysis and Stochastics.
Minimum R: ≥ 3.3.0
Bundled data: 6.7 KB / 1 file
Download size: 140 KB

Appears in task views

Medical Image Analysis

Cite

Cite this package

Run in R for the authors' entry:

citation("fmri")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.18637/jss.v044.i11, 10.1016/j.neuroimage.2006.06.029, 10.1016/j.neuroimage.2010.04.241.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for fmri version 1.9.12.1 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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