fastshap

Fast Approximate Shapley Values

v0.1.1 · Feb 22, 2024 · GPL (>= 2)

Description

Computes fast (relative to other implementations) approximate Shapley values for any supervised learning model. Shapley values help to explain the predictions from any black box model using ideas from game theory; see Strumbel and Kononenko (2014) <doi:10.1007/s10115-013-0679-x> for details.

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CRAN Check Status

10 ERROR

4 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	ERROR	67.1s
r-devel-linux-x86_64-debian-gcc	ERROR	47.6s
r-devel-linux-x86_64-fedora-clang	ERROR	97.4s
r-devel-linux-x86_64-fedora-gcc	ERROR	116.1s
r-devel-macos-arm64	ERROR	22s
r-devel-windows-x86_64	ERROR	115s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	53s
r-oldrel-windows-x86_64	ERROR	129s
r-patched-linux-x86_64	ERROR	62.5s
r-release-linux-x86_64	ERROR	58.3s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	74s
r-release-windows-x86_64	ERROR	107s

Check details (10 non-OK)

ERROR r-devel-linux-x86_64-debian-clang

tests

Running ‘tinytest.R’ [4s/5s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > 
  > if ( requireNamespace("tinytest", quietly=TRUE) ){
  +   home <- length(unclass(packageVersion("fastshap"))[[1L]]) == 4
  +   tinytest::test_package("fastshap", at_home = home)
  + }
  
  test-adjust.R.................    0 tests    79ms [Exited at #7: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
  
  test-baseline.R...............    0 tests    4ms [Exited at #4: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
  
  test-convergence.R............    0 tests    2ms [Exited at #4: Test not ready]
  
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    1 tests OK 
  test-copy-classes.R...........    2 tests OK 
  test-copy-classes.R..........
...[truncated]...
.R..................    4 tests OK Error in phis[, "BIAS"] : incorrect number of dimensions
  Calls: <Anonymous> ... FUN -> eval -> eval -> <Anonymous> -> explain.xgb.Booster
  In addition: Warning messages:
  1: In throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized),  :
    Passed unrecognized parameters: verbose. This warning will become an error in a future version.
  2: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
  3: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'label' has been renamed to 'y'. This warning will become an error in a future version.
  4: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version.
  Execution halted

ERROR r-devel-linux-x86_64-debian-gcc

tests

Running ‘tinytest.R’ [3s/3s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > 
  > if ( requireNamespace("tinytest", quietly=TRUE) ){
  +   home <- length(unclass(packageVersion("fastshap"))[[1L]]) == 4
  +   tinytest::test_package("fastshap", at_home = home)
  + }
  
  test-adjust.R.................    0 tests    47ms [Exited at #7: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
  
  test-baseline.R...............    0 tests    2ms [Exited at #4: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
  
  test-convergence.R............    0 tests    5ms [Exited at #4: Test not ready]
  
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    1 tests OK 
  test-copy-classes.R...........    2 tests OK 
  test-copy-classes.R..........
...[truncated]...
.R..................    4 tests OK Error in phis[, "BIAS"] : incorrect number of dimensions
  Calls: <Anonymous> ... FUN -> eval -> eval -> <Anonymous> -> explain.xgb.Booster
  In addition: Warning messages:
  1: In throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized),  :
    Passed unrecognized parameters: verbose. This warning will become an error in a future version.
  2: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
  3: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'label' has been renamed to 'y'. This warning will become an error in a future version.
  4: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version.
  Execution halted

ERROR r-devel-linux-x86_64-fedora-clang

tests

Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > 
  > if ( requireNamespace("tinytest", quietly=TRUE) ){
  +   home <- length(unclass(packageVersion("fastshap"))[[1L]]) == 4
  +   tinytest::test_package("fastshap", at_home = home)
  + }
  
  test-adjust.R.................    0 tests    0.1s [Exited at #7: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
  
  test-baseline.R...............    0 tests    4ms [Exited at #4: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
  
  test-convergence.R............    0 tests    3ms [Exited at #4: Test not ready]
  
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    1 tests OK 
  test-copy-classes.R...........    2 tests OK 
  test-copy-classes.R...........    3 t
...[truncated]...
.R..................    4 tests OK Error in phis[, "BIAS"] : incorrect number of dimensions
  Calls: <Anonymous> ... FUN -> eval -> eval -> <Anonymous> -> explain.xgb.Booster
  In addition: Warning messages:
  1: In throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized),  :
    Passed unrecognized parameters: verbose. This warning will become an error in a future version.
  2: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
  3: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'label' has been renamed to 'y'. This warning will become an error in a future version.
  4: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version.
  Execution halted

ERROR r-devel-linux-x86_64-fedora-gcc

tests

Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > 
  > if ( requireNamespace("tinytest", quietly=TRUE) ){
  +   home <- length(unclass(packageVersion("fastshap"))[[1L]]) == 4
  +   tinytest::test_package("fastshap", at_home = home)
  + }
  
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    Error in predict.lgb.Booster(object, data = newdata, rawscore = TRUE) : 
    Argument 'rawscore' is no longer supported. Use type='raw' instead.
  Calls: <Anonymous> ... eval -> eval -> pfun.lgb -> predict -> predict.lgb.Booster
  Execution halted

ERROR r-devel-macos-arm64

tests

Running ‘tinytest.R’ [1s/1s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > 
  > if ( requireNamespace("tinytest", quietly=TRUE) ){
  +   home <- length(unclass(packageVersion("fastshap"))[[1L]]) == 4
  +   tinytest::test_package("fastshap", at_home = home)
  + }
  
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    
  test-adjust.R.................    0 tests    Error in predict.lgb.Booster(object, data = newdata, rawscore = TRUE) : 
    Argument 'rawscore' is no longer supported. Use type='raw' instead.
  Calls: <Anonymous> ... eval -> eval -> pfun.lgb -> predict -> predict.lgb.Booster
  Execution halted

ERROR r-devel-windows-x86_64

tests

Running 'tinytest.R' [2s]
Running the tests in 'tests/tinytest.R' failed.
Complete output:
  > 
  > if ( requireNamespace("tinytest", quietly=TRUE) ){
  +   home <- length(unclass(packageVersion("fastshap"))[[1L]]) == 4
  +   tinytest::test_package("fastshap", at_home = home)
  + }
  
  test-adjust.R.................    0 tests    81ms [Exited at #7: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
  
  test-baseline.R...............    0 tests    3ms [Exited at #4: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
  
  test-convergence.R............    0 tests    2ms [Exited at #4: Test not ready]
  
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    1 tests OK 
  test-copy-classes.R...........    2 tests OK 
  test-copy-classes.R...........  
...[truncated]...
.R..................    4 tests OK Error in phis[, "BIAS"] : incorrect number of dimensions
  Calls: <Anonymous> ... FUN -> eval -> eval -> <Anonymous> -> explain.xgb.Booster
  In addition: Warning messages:
  1: In throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized),  :
    Passed unrecognized parameters: verbose. This warning will become an error in a future version.
  2: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
  3: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'label' has been renamed to 'y'. This warning will become an error in a future version.
  4: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version.
  Execution halted

ERROR r-oldrel-windows-x86_64

tests

Running 'tinytest.R' [3s]
Running the tests in 'tests/tinytest.R' failed.
Complete output:
  > 
  > if ( requireNamespace("tinytest", quietly=TRUE) ){
  +   home <- length(unclass(packageVersion("fastshap"))[[1L]]) == 4
  +   tinytest::test_package("fastshap", at_home = home)
  + }
  
  test-adjust.R.................    0 tests    0.1s [Exited at #7: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
  
  test-baseline.R...............    0 tests    5ms [Exited at #4: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
  
  test-convergence.R............    0 tests    3ms [Exited at #4: Test not ready]
  
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    1 tests OK 
  test-copy-classes.R...........    2 tests OK 
  test-copy-classes.R...........  
...[truncated]...
.R..................    4 tests OK Error in phis[, "BIAS"] : incorrect number of dimensions
  Calls: <Anonymous> ... FUN -> eval -> eval -> <Anonymous> -> explain.xgb.Booster
  In addition: Warning messages:
  1: In throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized),  :
    Passed unrecognized parameters: verbose. This warning will become an error in a future version.
  2: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
  3: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'label' has been renamed to 'y'. This warning will become an error in a future version.
  4: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version.
  Execution halted

ERROR r-patched-linux-x86_64

tests

Running ‘tinytest.R’ [4s/4s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > 
  > if ( requireNamespace("tinytest", quietly=TRUE) ){
  +   home <- length(unclass(packageVersion("fastshap"))[[1L]]) == 4
  +   tinytest::test_package("fastshap", at_home = home)
  + }
  
  test-adjust.R.................    0 tests    74ms [Exited at #7: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
  
  test-baseline.R...............    0 tests    8ms [Exited at #4: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
  
  test-convergence.R............    0 tests    2ms [Exited at #4: Test not ready]
  
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    1 tests OK 
  test-copy-classes.R...........    2 tests OK 
  test-copy-classes.R..........
...[truncated]...
.R..................    4 tests OK Error in phis[, "BIAS"] : incorrect number of dimensions
  Calls: <Anonymous> ... FUN -> eval -> eval -> <Anonymous> -> explain.xgb.Booster
  In addition: Warning messages:
  1: In throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized),  :
    Passed unrecognized parameters: verbose. This warning will become an error in a future version.
  2: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
  3: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'label' has been renamed to 'y'. This warning will become an error in a future version.
  4: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version.
  Execution halted

ERROR r-release-linux-x86_64

tests

Running ‘tinytest.R’ [6s/7s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > 
  > if ( requireNamespace("tinytest", quietly=TRUE) ){
  +   home <- length(unclass(packageVersion("fastshap"))[[1L]]) == 4
  +   tinytest::test_package("fastshap", at_home = home)
  + }
  
  test-adjust.R.................    0 tests    77ms [Exited at #7: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
  
  test-baseline.R...............    0 tests    6ms [Exited at #4: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
  
  test-convergence.R............    0 tests    8ms [Exited at #4: Test not ready]
  
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    1 tests OK 
  test-copy-classes.R...........    2 tests OK 
  test-copy-classes.R..........
...[truncated]...
.R..................    4 tests OK Error in phis[, "BIAS"] : incorrect number of dimensions
  Calls: <Anonymous> ... FUN -> eval -> eval -> <Anonymous> -> explain.xgb.Booster
  In addition: Warning messages:
  1: In throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized),  :
    Passed unrecognized parameters: verbose. This warning will become an error in a future version.
  2: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
  3: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'label' has been renamed to 'y'. This warning will become an error in a future version.
  4: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version.
  Execution halted

ERROR r-release-windows-x86_64

tests

Running 'tinytest.R' [2s]
Running the tests in 'tests/tinytest.R' failed.
Complete output:
  > 
  > if ( requireNamespace("tinytest", quietly=TRUE) ){
  +   home <- length(unclass(packageVersion("fastshap"))[[1L]]) == 4
  +   tinytest::test_package("fastshap", at_home = home)
  + }
  
  test-adjust.R.................    0 tests    64ms [Exited at #7: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
  
  test-baseline.R...............    0 tests    4ms [Exited at #4: 'requireNamespace("lightgbm", quietly = TRUE)' is not TRUE]
  
  test-convergence.R............    0 tests    2ms [Exited at #4: Test not ready]
  
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    0 tests    
  test-copy-classes.R...........    1 tests OK 
  test-copy-classes.R...........    2 tests OK 
  test-copy-classes.R...........  
...[truncated]...
.R..................    4 tests OK Error in phis[, "BIAS"] : incorrect number of dimensions
  Calls: <Anonymous> ... FUN -> eval -> eval -> <Anonymous> -> explain.xgb.Booster
  In addition: Warning messages:
  1: In throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized),  :
    Passed unrecognized parameters: verbose. This warning will become an error in a future version.
  2: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
  3: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'label' has been renamed to 'y'. This warning will become an error in a future version.
  4: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version.
  Execution halted

Check History

ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 24, 2026

ERROR r-devel-linux-x86_64-debian-gcc

tests

Running ‘tinytest.R’ [2s/3s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > 
  > if ( requireNamespace("tinytest", quietly=TRUE) ){
  +   home <- length(unclass(packageVersion("fastshap"))[[1L]]) == 4
  +   tinytest::test_packag
...[truncated]...
ome an error in a future version.
  4: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '",  :
    Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version.
  Execution halted

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (9)

imports

MLwrap PEAXAI itsdm

suggests

ENMTools SuperSurv innsight mlr3summary ubair vip

Dependency Network

Version History

new 0.1.1 Mar 10, 2026

updated 0.1.1 ← 0.1.0 diff Feb 21, 2024

updated 0.1.0 ← 0.0.7 diff Jun 5, 2023

updated 0.0.7 ← 0.0.6 diff Dec 5, 2021

updated 0.0.6 ← 0.0.5 diff Dec 2, 2021

updated 0.0.5 ← 0.0.4 diff Feb 1, 2020

updated 0.0.4 ← 0.0.3 diff Jan 25, 2020

updated 0.0.3 ← 0.0.2 diff Dec 2, 2019

new 0.0.2 Nov 21, 2019

Maintainer

Brandon Greenwell

Dependencies

Depends

R (>= 3.6.0)

Imports

foreach Rcpp (>= 1.0.1) utils

Suggests

AmesHousing covr earth knitr ranger rmarkdown shapviz (>= 0.8.0) tibble tinytest (>= 1.4.1)

Compilation

Needs compilation

First Published

Nov 21, 2019

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CRAN Checks

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