R Observatory: Metrics for extBatchMarking version 1.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

extBatchMarking

1.1.0Package record

Extended Batch Marking Models

0packages depend

2.5Kdownloads / year

20.8%test coverage

11/13flavors OK

Overview

About

Maintained by Kehinde OlobatuyiCRAN page ↗GitHub ↗Issues ↗

A system for batch-marking data analysis to estimate survival probabilities, capture probabilities, and enumerate the population abundance for both marked and unmarked individuals. The estimation of only marked individuals can be achieved through the batchMarkOptim() function. Similarly, the combined marked and unmarked can be achieved through the batchMarkUnmarkOptim() function. The algorithm was also implemented for the hidden Markov model encapsulated in batchMarkUnmarkOptim() to estimate the abundance of both marked and unmarked individuals in the population. The package is based on the paper: "Hidden Markov Models for Extended Batch Data" of Cowen et al. (2017) doi:10.1111/biom.12701.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("extBatchMarking", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Olobatuyi/extBatchMarking_cov")

Development version from Olobatuyi/extBatchMarking_cov. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-extbatchmarking

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-extBatchMarking

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-extBatchMarking

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTERd contentsr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Rd files without \usage:
  ‘gamma_gt.Rd’
\arguments should not be documented without \usage.

CRAN check page ↗

Slowest check: 3.3 min · r-devel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 1 NOTE2026-07-11
OK14 OK2026-04-22
ERROR13 OK, 1 ERROR2026-04-18
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.1.0

READMEYes · 2,494 wordsVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 19 (1 internal)includes a package overview page
Examples that run: 100%4 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 11%

How these are measured

Downloads

2.5K

CRAN downloads in the past year

Rank #16,776 · ~7/day · ~209/mo

Releases R versions

Daily download trend is not available in this view yet.

29430 days

75290 days

2.5K1 year

Compare downloads with other packages →

Also on348 r2u8 autocran

How downloads are counted

Repository

olobatuyi/extbatchmarking_cov ↗Account: Olobatuyi

0Stars

0Forks

0Open issues

0Open PRs

0Releases

License file reads as AGPL-3.0 · Last activity 2025-06-07

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: not measured

How these are measured

PracticesBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/olobatuyi/extbatchmarking_cov on 2026-10-21.

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing extBatchMarking adds 6 packages (2 with compiled code, 3.6 MB of source tarballs). Heaviest: Rcpp 1.8 MB, RcppArmadillo 1.0 MB, optimbase 300 KB.

Depends (1)

R >= 4.0

Imports (5)

doParallel foreach optimbase Rcppparallel

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (2)

testthat knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (5)

Kehinde Olobatuyi

Author, Maintainer since 1.0 (2023)

Author

Author

Author

Author

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.1.0Latest
record
2024-10-05 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
1.0.1
record
2024-01-10 · diff ↗
1.0
record
2023-12-17
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-12-17
Total releases: 3 / 3 yrs
License: AGPL (>= 3) OSI
Minimum R: ≥ 4.0
Bundled data: 0.2 KB / 1 file
Download size: 40 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("extBatchMarking")

Format

Olobatuyi, K., Cowen, L. L., Hof, S., Johns, S., & Parker, M. R. (2024). extBatchMarking: Extended Batch Marking Models (Version 1.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.extBatchMarking

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for extBatchMarking version 1.1.0 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →