R Observatory: Metrics for extBatchMarking version 1.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

extBatchMarking

1.1.0

Extended Batch Marking Models

0packages depend

2.2Kdownloads / year

20.8%test coverage

11/13checks pass

Overview

About

Maintained by Kehinde OlobatuyiFirst published 2023-12-173 releasesCRAN page ↗GitHub ↗

A system for batch-marking data analysis to estimate survival probabilities, capture probabilities, and enumerate the population abundance for both marked and unmarked individuals. The estimation of only marked individuals can be achieved through the batchMarkOptim() function. Similarly, the combined marked and unmarked can be achieved through the batchMarkUnmarkOptim() function. The algorithm was also implemented for the hidden Markov model encapsulated in batchMarkUnmarkOptim() to estimate the abundance of both marked and unmarked individuals in the population. The package is based on the paper: "Hidden Markov Models for Extended Batch Data" of Cowen et al. (2017) doi:10.1111/biom.12701.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("extBatchMarking", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Olobatuyi/extBatchMarking_cov")

Development version from Olobatuyi/extBatchMarking_cov. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-extbatchmarking

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-extBatchMarking

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-extBatchMarking

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 3.3 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.03

20.8%

Coverage · measured lines

100%

Documentation · exports

5

Dependencies · direct

Check history

NOTE2026-07-11
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 2,494 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 11%

Downloads

2.2K

CRAN downloads in the past year

Rank #19,830 · ~6/day · ~185/mo

Releases R versions

Daily download trend is not available in this view yet.

12730 days

55990 days

2.2K1 year

Compare downloads with other packages →

Also on389 r2u20 autocran

Repository

GitHub ↗ olobatuyi/extbatchmarking_cov

0Stars

0Forks

0Open issues

0Open PRs

0Releases

License AGPL-3.0 · Last activity 2025-06-07

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/olobatuyi/extbatchmarking_cov on 2026-08-16.

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0

Imports (5)

doParallel foreach optimbase Rcppparallel

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (2)

testthat knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (5)

Maintainer (1)

Kehinde Olobatuyi

Author, Maintainer

Authors (5)

Author, Maintainer

Author

Author

Author

Author

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.1.0Latest
2024-10-05 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
1.0.1
2024-01-10 · diff ↗
1.0
2023-12-17
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-12-17
Total releases: 3 / 3 yrs
License: AGPL (>= 3) OSI
Minimum R: ≥ 4.0
Bundled data: 0.2 KB / 1 file
Download size: 40 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("extBatchMarking")

Format

Olobatuyi, K., Cowen, L. L., Hof, S., Johns, S., & Parker, M. R. (2024). extBatchMarking: Extended Batch Marking Models (Version 1.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.extBatchMarking

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for extBatchMarking version 1.1.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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