R Observatory: Metrics for epiworldRShiny version 0.2.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

epiworldRShiny

0.2.3Package record

A 'shiny' Wrapper of the R Package 'epiworldR'

0packages depend

6.1Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Andrew PulsipherCRAN page ↗GitHub ↗Website ↗Issues ↗Declared funder: Centers for Disease Control and Prevention

R 'shiny' web apps for epidemiological Agent-Based Models. It provides a user-friendly interface to the Agent-Based Modeling (ABM) R package 'epiworldR' (Meyer et al., 2023) DOI:10.21105/joss.05781. Some of the main features of the package include the Susceptible-Infected-Susceptible (SIS), Susceptible-Infected-Recovered (SIR), and Susceptible-Exposed-Infected-Recovered (SEIR) models. 'epiworldRShiny' provides a web-based user interface for running various epidemiological ABMs, simulating interventions, and visualizing results interactively.

Changes in 0.2.3

Updated to epiworldR version 0.8.2.0: New version of the measles model with new parameters.
Improved the UI for the measles model to make it more user-friendly.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("epiworldRShiny", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("UofUEpiBio/epiworldRShiny")

Development version from UofUEpiBio/epiworldRShiny. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-epiworldrshiny

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-epiworldRShiny

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-epiworldRShiny

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.9 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.2.3

READMEYes · 490 wordsVignettes· In the repository, left out of the releaseNEWSYes · 100% structured · mentions 0.2.3Citation fileNoWebsiteYes · pkgdown

Description cites a JOSS paper

Help pages: 11
Examples that run: 100%8 run in a plain check
Exported functions with examples: 73%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

6.1K

CRAN downloads in the past year

Rank #9,084 · ~17/day · ~505/mo

Releases R versions

Daily download trend is not available in this view yet.

33330 days

1.1K90 days

6.1K1 year

Compare downloads with other packages →

Also on87 r2u9 autocran

How downloads are counted

Repository

uofuepibio/epiworldrshiny ↗Organization: UofUEpiBio

3Stars

2Forks

10Open issues

1Open PRs

2Releases

198Commits

5Commit identities

abmagent-based-modelingcovid-19epidemic-simulationsepidemiologynetscinetwork-analysisshinyapps

198 commits · Last activity 2026-10-07 · 0% stars, 30d · Default branch at 0.2.7, ahead of CRAN 0.2.3 (checked 2026-10-21)

Responsiveness

How these are sampled

PRs merged (all time): 86%
Median days to close, 50 most recently updated closed issues: 11
Median days to close, 50 most recently updated closed PRs: 4

Stars over time

2025-06-23 · 32026-07-07 · 3

How these are measured

PracticesBeta

11 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/uofuepibio/epiworldrshiny on 2026-10-21.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Governance and community (1)

Code of conduct

Docs source (3)

README.Rmd

GitHub Pages site last deployed 2026-09-11 · The repository has a site deploy workflow

Reproducibility and dev environment (3)

data-raw/MakefileDev Container

Show all practicesHide 2 practices

Research and citation (1)

CITATION.cff

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

AI coding toolsBeta

This repository shows signs of AI coding tools.

GitHub Copilotfirst seen 2025-11-18
Pull request: opened by its own account
Commits: 1 by its own account · at least 2 crediting it in the message
Claude Codefirst seen 2026-08-06
Pull request it wrote: opened by a project member
Commits: at least 5 crediting it in the message
Codexfirst seen 2026-09-30
Commits: at least 1 crediting it in the message

Shared conventions any agent may read, so they name no particular tool.

Seen in the repository: AGENTS.md

Models named in its commits

Claude Opus 52 commits · Aug to Sep 2026
Claude Sonnet 52 commits · Sep 2026
Claude Opus 5.51 commit · Oct 2026

Counts are commits, not lines of code. Commits by a tool's accounts count once across all of its accounts. Commits crediting it are the largest count among its credit lines, a minimum.How this is detected·Detection ruleset v4 (updated 2026-09-27)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing epiworldRShiny adds 71 packages (39 with compiled code, 73 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (2)

R >= 4.1.0shiny

Imports (6)

utilsDT ggplot2 epiworldR plotly bslib

LinkingTo (0)

none

Suggests (1)

knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (11)

Andrew Pulsipher

Author, Maintainer since 0.2.3 (2025) · added in 0.2.3

Author

Author

Contributor

Contributor

Contributor

Contributor

Contributor

Contributor

Contributor

Centers for Disease Control and Prevention

Funder

Award number 1U01CK000585; 75D30121F00003

Previously maintained by Derek Meyer (0.1-0).

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.2.3Latest
record
2025-05-14 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
0.1-0
record
2024-06-05
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-06-05
Total releases: 2 / 2 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1.0
Download size: 224 KB

Appears in task views

Epidemiology

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("epiworldRShiny")

Format

Pulsipher, A., Centers for Disease Control and Prevention, Gruninger, R., Keegan, L., Khader, K., Love, J., Meyer, D., Samore, M., Stratford, K., Toth, D., & Vega Yon, G. (2025). epiworldRShiny: A 'shiny' Wrapper of the R Package 'epiworldR' (Version 0.2.3) [Computer software]. https://doi.org/10.32614/CRAN.package.epiworldRShiny

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

The repository also keeps a CITATION.cff.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for epiworldRShiny version 0.2.3 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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