R Observatory: Metrics for epinetr version 0.96

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

epinetr

0.96Package record

Epistatic Network Modelling with Forward-Time Simulation

0packages depend

3.4Kdownloads / year

55.7%test coverage

0/13flavors OK

Overview

About

Maintained by Dion DettererCRAN page ↗GitHub ↗Issues ↗

Allows for forward-in-time simulation of epistatic networks with associated phenotypic output.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("epinetr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("diondetterer/epinetr")

Development version from diondetterer/epinetr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-epinetr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-epinetr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13NOTE

Check messages

NOTERd filesr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

checkRd: (-1) runSim.Rd:111: Lost braces
   111 | \ifelse{html}{\out{<i>r</i><sub>1</sub> = 1}}{{\eqn{r_1 = 1}}{r_1 = 1}} while the individual with the lowest phenotypic value
       |                                                              ^
checkRd: (-1) runSim.Rd:112: Lost braces
   112 | is given the rank \ifelse{html}{\out{<i>r<sub>n</sub></i> = <i>n</i>}}{{\eqn{r_n = n}}{r_n = n}}), the probability of an individual
       |                                                                                       ^
checkRd: (-1) runSim.Rd:120-122: Lost braces
   120 | }{
       |  ^

CRAN check page ↗

Slowest check: 5.9 min · r-oldrel-windows-x86_64

Status changes

NOTE13 NOTENow
NOTE14 NOTE2026-04-22
ERROR13 NOTE, 1 ERROR2026-04-18
NOTE14 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.96

READMEYes · 332 wordsVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 27includes a package overview page
Examples that run: 78%18 run in a plain check · 5 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 85%
Help pages citing references: 4%

Also includes 1 demo script (run with demo())

Vignettes (1)

Using the epinetr package

How these are measured

Downloads

3.4K

CRAN downloads in the past year

Rank #12,830 · ~9/day · ~284/mo

Releases R versions

Daily download trend is not available in this view yet.

32430 days

88190 days

3.4K1 year

Compare downloads with other packages →

Also on356 r2u

How downloads are counted

Repository

diondetterer/epinetr ↗Account: diondetterer

0Stars

1Forks

1Open issues

0Open PRs

0Releases

32Commits

1Commit identities

License file reads as GPL-3.0 · 32 commits · Last activity 2022-03-10

Responsiveness

not measured

Forks over time

2026-01-09 · 12026-07-07 · 1

How these are measured

PracticesBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/diondetterer/epinetr on 2026-10-21.

Continuous integration (1)

Travis CI (config file)

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Installing epinetr adds 45 packages (26 with compiled code, 51 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, GA 4.8 MB.

Depends (1)

R >= 2.10

Imports (8)

GA ggplot2 igraphmethodsRcpp RcppAlgos reshape2 vcfR

LinkingTo (1)

Rcpp

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Dion Detterer

Author, Maintainer since 0.93 (2020)

Cedric Gondro

Author

Paul Kwan

Author

Releases (4)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.96Latest
record
2022-03-10 · current release · diff ↗
0.95
record
2021-11-09 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.94
record
2021-01-10 · diff ↗
0.93
record
2020-11-04
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-11-04
Total releases: 4 / 6 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 2.10
Bundled data: 14 KB / 3 files
Download size: 550 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("epinetr")

Format

Detterer, D., Gondro, C., & Kwan, P. (2022). epinetr: Epistatic Network Modelling with Forward-Time Simulation (Version 0.96) [Computer software]. https://doi.org/10.32614/CRAN.package.epinetr

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for epinetr version 0.96 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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