R Observatory: Metrics for epimdr version 0.6-5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

epimdr

0.6-5

Functions and Data for "Epidemics: Models and Data in R"

0packages depend

3.5Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Ottar N. BjornstadFirst published 2018-10-265 releasesCRAN page ↗GitHub ↗

Functions, data sets and shiny apps for "Epidemics: Models and Data in R" by Ottar N. Bjornstad (ISBN 978-3-319-97487-3) https://www.springer.com/gp/book/9783319974866. The package contains functions to study the S(E)IR model, spatial and age-structured SIR models; time-series SIR and chain-binomial stochastic models; catalytic disease models; coupled map lattice models of spatial transmission and network models for social spread of infection. The package is also an advanced quantitative companion to the coursera Epidemics Massive Online Open Course https://www.coursera.org/learn/epidemics.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("epimdr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("objornstad/epimdr")

Development version from objornstad/epimdr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-epimdr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-epimdr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-epimdr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.8 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

3

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-11
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

WARNING2026-05-10
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 72%
Documented parameters: 98%
Return-value docs: 81%
References docs: 0%

Downloads

3.5K

CRAN downloads in the past year

Rank #10,527 · ~10/day · ~289/mo

Releases R versions

Daily download trend is not available in this view yet.

24930 days

91490 days

3.5K1 year

Compare downloads with other packages →

Also on136 r2u20 autocran43 c2d4u

Repository

GitHub ↗ objornstad/epimdr

55Stars

25Forks

2Open issues

1Open PRs

0Releases

87Commits

1Contributors

87 commits · Last activity 2022-06-12

Stars over time

2024-07-24 · 552026-07-07 · 55

Repository practices

Upstream repositoryBeta

Checks run against github.com/objornstad/epimdr on 2026-08-16.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Depends (4)

R >= 3.3.2shiny deSolve polspline

Imports (0)

none

LinkingTo (0)

none

Suggests (15)

ade4 bbmle fields forecast imputeTS lme4 ncf nleqslvnlmenlts plotrix pomp rootSolve Rwave statnet

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Ottar N. Bjornstad

Author, Maintainer

Authors (1)

Ottar N. Bjornstad

Author, Maintainer

Listed in earlier versions (1)

Ottar N.

no longer listed · 0.6-1 to 0.6-5

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.6-5Latest
2020-01-25 · current release · diff ↗
0.6-4
2019-08-26 · diff ↗
0.6-3
2019-05-03 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.6-2
2019-01-17 · diff ↗
0.6-1
2018-10-26
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-10-26
Total releases: 5 / 8 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.3.2
Bundled data: 832 KB / 35 files
Download size: 849 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Epidemiology

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("epimdr")

Format

Bjornstad, O. N. (2020). epimdr: Functions and Data for "Epidemics: Models and Data in R" (Version 0.6-5) [Computer software]. https://doi.org/10.32614/CRAN.package.epimdr

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for epimdr version 0.6-5 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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