R Observatory: Metrics for ensemblQueryR version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2023-11-06. Its history is shown below.

Reason: policy violation. On Internet access

Details below reflect version 0.1.0, its last release before removal.

ensemblQueryR

0.1.0

Simple, Fast and Efficient Querying of the 'Ensembl' API

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Aine Fairbrother-Browne1 releasesCRAN page ↗

Suite of tools to enable fast, efficient, high-throughput, R workflow integrable querying of 'Ensembl' REST API endpoints (https://rest.ensembl.org/).

Install

R (source archive)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/ensemblQueryR/ensemblQueryR_0.1.0.tar.gz"
pkgFile <- "ensemblQueryR_0.1.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ensemblqueryr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-ensemblQueryR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.22

not tracked

Coverage

100%

Documentation · exports

12

Dependencies · direct

Documentation

READMEYes · 583 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 75%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on64 r2u9 autocran

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (12)

dplyr httr jsonlite magrittrparallelpurrr rlang tibble tidyrutilsvroom xml2

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Other (1)

Aine Fairbrother-Browne

Contributor

Package Timeline

1 release. R releases are shown for context.

R
R 4.4.0 released · 2024-04-24
archivedRemoved from CRAN
2023-11-06
policy violation On Internet access
0.1.0
2023-05-23
R
R 4.3.0 released · 2023-04-21

Package metadata

Total releases: 1
License: MIT + file LICENSE OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ensemblQueryR")

Format

Fairbrother-Browne, A. (n.d.). ensemblQueryR: Simple, Fast and Efficient Querying of the 'Ensembl' API (Version 0.1.0) [Computer software]. Retrieved August 14, 2026, from https://CRAN.R-project.org/package=ensemblQueryR

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ensemblQueryR version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-08-13. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-13, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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