R Observatory: Metrics for enrichit version 0.2.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

enrichit

0.2.1

'C++' Implementations of Functional Enrichment Analysis

0packages depend

79.3Kdownloads / year

75.8%test coverage

13/13checks pass

Overview

About

Maintained by Guangchuang YuFirst published 2025-12-2210 releasesCRAN page ↗

Fast implementations of functional enrichment analysis methods using 'C++' via 'Rcpp'. Currently provides Over-Representation Analysis (ORA), Gene Set Enrichment Analysis (GSEA), Weighted Enrichment Analysis for ORA and GSEA, Network-based Set Enrichment Analysis (NSEA), multi-layer network-based enrichment, and multi-omics integration workflows. Additional features include early fusion at the feature level, late fusion at the pathway level, multi-omics contribution tracing, topology-aware explanation helpers, Bayesian term selection, and extremely fast Random Walk with Restart (RWR) using 'RcppEigen'. The enrichment methods build on GSEA by Subramanian et al. (2005) doi:10.1073/pnas.0506580102, the multilevel strategy derived from 'fgsea' by Korotkevich et al. (2021) doi:10.1101/060012, and network-based enrichment ideas described by Glaab et al. (2012) doi:10.1093/bioinformatics/bts389.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("enrichit", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-enrichit

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-enrichit

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-enrichit

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 4.1 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.29

75.8%

Coverage · measured lines

100%

Documentation · exports

6

Dependencies · direct

Check history

OK2026-08-08
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-07-11
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 558 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 50%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

79.3K

CRAN downloads in the past year

Rank #830 · ~217/day · ~6.6K/mo

Releases R versions

Daily download trend is not available in this view yet.

19.4K30 days

58.5K90 days

79.3K1 year

Compare downloads with other packages →

Also on1.2K r2u13 autocran

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (6)

MatrixmethodsRcpp rlangstatsyulab.utils

LinkingTo (2)

Rcpp RcppEigen

Suggests (8)

AnnotationDbi BiasedUrn clusterProfiler DOSE fgsea gson qvalue testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Guangchuang Yu

Author, Maintainer

Authors (1)

Guangchuang Yu

Author, Maintainer

Package Timeline

10 releases. Pick two to compare their code metrics. R releases are shown for context.

0.2.1Latest
2026-08-05 · current release · diff ↗
0.2.0
2026-07-02 · diff ↗
0.1.5
2026-06-16 · diff ↗
R
R 4.6.0 released · 2026-04-24
0.1.4
2026-04-09 · diff ↗
0.1.3
2026-03-10 · diff ↗
0.1.2
2026-02-26 · diff ↗
0.1.1
2026-02-02 · diff ↗
0.1.0
2026-01-18 · diff ↗
0.0.9
2026-01-10 · diff ↗
0.0.8
2025-12-22
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-12-22
Total releases: 10 / 1 yrs
License: Artistic-2.0 OSI
Minimum R: ≥ 3.5.0
Download size: 76 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("enrichit")

Format

Yu, G. (2026). enrichit: 'C++' Implementations of Functional Enrichment Analysis (Version 0.2.1) [Computer software]. https://doi.org/10.32614/CRAN.package.enrichit

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for enrichit version 0.2.1 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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