R Observatory: Metrics for embryogrowth version 2026.8.24

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

embryogrowth

2026.8.24Package record

Tools to Analyze the Thermal Reaction Norm of Embryo Growth

0packages depend

7.4Kdownloads / year

–test coverage

8/13flavors OK

Overview

About

Maintained by Marc GirondotCRAN page ↗

Tools to analyze the embryo growth and the sexualisation thermal reaction norms. See doi:10.7717/peerj.8451 for tsd functions; see doi:10.1016/j.jtherbio.2014.08.005 for thermal reaction norm of embryo growth.

Changes in 2026.8.24

New CRAN version - 2026.8.24 (2026-08-24)

From NEWS in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("embryogrowth", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-embryogrowth

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-embryogrowth

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-embryogrowth

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

5NOTE8OK

Check messages

NOTEdependencies in R coder-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Base package in Suggests/Enhances imported in NAMESPACE:
  ‘parallel’

r-devel-windows-x86_64

Base package in Suggests/Enhances imported in NAMESPACE:
  'parallel'

CRAN check page ↗

Slowest check: 4.2 min · r-oldrel-windows-x86_64

Status changes

NOTE8 OK, 5 NOTENow
NOTE11 OK, 2 NOTE2026-09-12
OK13 OK2026-08-28
NOTE11 OK, 2 NOTE2026-07-16
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08

Show 1 earlier changeHide 1 earlier change

OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2026.8.24

READMENoVignettesNoNEWSYes · 33% structured · mentions 2026.8.24Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 79includes a package overview page
Examples that run: 0%79 never run
Exported functions with examples: 100%
Documented parameters: 94%
Return-value docs: 100%
Help pages citing references: 33% with a bibliography file

How these are measured

Downloads

7.4K

CRAN downloads in the past year

Rank #5,573 · ~20/day · ~619/mo

Releases R versions

Daily download trend is not available in this view yet.

54030 days

1.5K90 days

7.4K1 year

Compare downloads with other packages →

Also on191 r2u12 autocran

How downloads are counted

Dependencies

Declared dependencies

16 external dependencies (excludes base and recommended)

Installing embryogrowth adds 26 packages (10 with compiled code, 22 MB of source tarballs). Heaviest: ggplot2 6.0 MB, optimx 2.2 MB, nloptr 2.1 MB.

Depends (6)

deSolve optimx numDeriv ggplot2 HelpersMG R (>= 4.1)

Imports (1)

Rdpack

LinkingTo (0)

none

Suggests (10)

entropy shiny coda polynom car gam pbapply cranlogsparallelmapdata

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Marc Girondot

Author, Maintainer since 5.0 (2014)

Releases (29)

Pick two releases to compare their code metrics.

2026.8.24Latest
record
2026-08-24 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
2025.12.22
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2025-12-22 · diff ↗
10.4
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2025-09-11 · diff ↗
10.3
record
2025-08-19 · diff ↗
10.2
record
2025-06-16 · diff ↗ ·
added 2 exports
HeterogeneityNests, UpdateNests
R
R 4.5.0 released · 2025-04-11
9.5
record
2024-08-23 · diff ↗ ·
added 1 export
ROSIE.version
R
R 4.4.0 released · 2024-04-24
9.1
record
2023-10-24 · diff ↗
R
R 4.3.0 released · 2023-04-21
8.7
record
2022-09-06 · diff ↗
8.6
record
2022-07-14 · diff ↗
8.5
record
2022-05-28 · diff ↗
R
R 4.2.0 released · 2022-04-22
8.4
record
2022-04-04 · diff ↗

Show 27 earlier eventsHide 27 earlier events

8.3-4
record
2022-02-17 · diff ↗
8.2
record
2021-09-16 · diff ↗
8.1
record
2021-06-04 · diff ↗ ·
removed 1 export
GenerateTest

added 4 exports
Generate_hatchling_metric, integral.Gompertz, integral.exponential, integral.linear
R
R 4.1.0 released · 2021-05-18
8.0
record
2020-10-22 · diff ↗ ·
added 2 exports
DatabaseTSD.version, movement
R
R 4.0.0 released · 2020-04-24
7.6
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2019-08-30 · diff ↗ ·
removed 3 exports
fitHS, lnLHS, modelHS

added 5 exports
HatchingSuccess.MHmcmc, HatchingSuccess.MHmcmc_p, HatchingSuccess.fit, HatchingSuccess.lnL, HatchingSuccess.model
R
R 3.6.0 released · 2019-04-26
7.4.1
record
2018-09-27 · diff ↗ ·
removed 1 export
precision.datalogger

added 1 export
uncertainty.datalogger
R
R 3.5.0 released · 2018-04-23
7.4
record
2018-03-26 · diff ↗ ·
removed 1 export
TestParallel

added 6 exports
calibrate.datalogger, fitHS, lnLHS, modelHS, precision.datalogger, test.parallel
7.1
record
2017-11-23 · diff ↗
7.0
record
2017-09-26 · diff ↗
R
R 3.4.0 released · 2017-04-21
6.5
record
2017-03-11 · diff ↗ ·
removed 2 exports
SEforR, plotR_hist

added 1 export
P_TRT
6.4
record
2016-10-02 · diff ↗ ·
added 1 export
web.tsd
6.3
record
2016-07-19 · diff ↗ ·
removed 1 export
.web.embryogrowth

added 1 export
SEforR
R
R 3.3.0 released · 2016-05-03
6.2
record
2016-01-08 · diff ↗
6.1.1
record
2015-10-16 · diff ↗
6.1
record
2015-10-12 · diff ↗
R
R 3.2.0 released · 2015-04-16
6.0
record
2015-04-15 · diff ↗ ·
removed 3 exports
embryogrowth_MHmcmc_p, minmax.periodic, temperature.periodic

added 4 exports
GRTRN_MHmcmc, STRN, STRN_MHmcmc, TRN_MHmcmc_p
archivedRemoved from CRAN
2015-03-20
'phenology' was
5.1
record
2014-10-06 · diff ↗ ·
removed 2 exports
.ShinyEmbryogrowth, embryogrowth_MHmcmc

added 5 exports
.web.embryogrowth, minmax.periodic, temperature.periodic, tsd_MHmcmc, tsd_MHmcmc_p
5.0
record
2014-08-15
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2014-08-15
Total releases: 29 / 12 yrs
License: GPL-2 OSI
Minimum R: ≥ 4.1
Bundled data: 1.8 MB / 22 files
Download size: 2.1 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("embryogrowth")

Format

Girondot, M. (2026). embryogrowth: Tools to Analyze the Thermal Reaction Norm of Embryo Growth (Version 2026.8.24) [Computer software]. https://doi.org/10.32614/CRAN.package.embryogrowth

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for embryogrowth version 2026.8.24 [Data set]. HJJB, LLC. Data release v2026-10-19. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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