R Observatory: Metrics for emBALVI version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

emBALVI

0.1.0

EM Bayesian Adaptive LASSO Variational Inference Based GWAS

0packages depend

1.4Kdownloads / year

0.0%test coverage

13/13checks pass

Overview

About

Maintained by Prakash KumarFirst published 2026-04-161 releasesCRAN page ↗

Performs Genome-Wide Association Study (GWAS) analysis using Expectation-Maximization Bayesian Adaptive LASSO with Variational Inference (emBALVI). Includes genotype preprocessing, genomic relationship matrix construction, GWAS analysis, Manhattan and QQ plotting.s.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("emBALVI", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-embalvi

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-emBALVI

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-emBALVI

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 53 s · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.06

0.0%

Coverage · measured lines

100%

Documentation · exports

2

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-17
3 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 45 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: not tracked
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

1.4K

CRAN downloads in the past year

Rank #11,445 · ~4/day · ~119/mo

Releases R versions

Daily download trend is not available in this view yet.

13430 days

86090 days

1.4K1 year

Compare downloads with other packages →

Also on30 r2u16 autocran

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0

Imports (2)

ggplot2 RColorBrewer

LinkingTo (0)

none

Suggests (3)

rmarkdown testthat roxygen2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (7)

Maintainer (1)

Prakash Kumar

Author, Maintainer

Authors (7)

Author, Maintainer

Author

Author

Author

Author

Author

Author

Listed in earlier versions (4)

Amrit Kumar

no longer listed · 0.1.0

Ranjit Kumar

no longer listed · 0.1.0

Sunil Kumar

no longer listed · 0.1.0

Himadri Sekhar

no longer listed · 0.1.0

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
2026-04-16 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-04-16
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.0
Bundled data: 718 KB / 4 files
Download size: 49 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("emBALVI")

Format

Kumar, P., Budhlakoti, N., Paul, A. K., Paul, R. K., Roy, H. S., Yadav, S. K., & Yeasin, M. (2026). emBALVI: EM Bayesian Adaptive LASSO Variational Inference Based GWAS (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.emBALVI

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for emBALVI version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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