R Observatory: Metrics for easynem version 1.0.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

easynem

1.0.3

Nematode Community Analysis

0packages depend

2.1Kdownloads / year

57.0%test coverage

13/13checks pass

Overview

About

Maintained by Wang KunguangFirst published 2025-10-281 releasesCRAN page ↗

Provides a built-in Nemaplex database for nematodes, which can be used to search for various nematodes. Also supports various nematode community and functional analyses such as nematode diversity, maturity index, metabolic footprint, and functional guild. The methods are based on https://shiny.wur.nl/ninja/, Bongers, T. (1990) doi:10.1007/BF00324627, Ferris, H. (2010) doi:10.1016/j.ejsobi.2010.01.003, Wan, B. et al. (2022) doi:10.1016/j.soilbio.2022.108695, and Van Den Hoogen, J. et al. (2019) doi:10.1038/s41586-019-1418-6.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("easynem", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-easynem

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-easynem

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-easynem

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 10.4 min · r-release-macos-x86_64

Code health

Yes

Tests · ratio 0.08

57.0%

Coverage · measured lines

100%

Documentation · exports

22

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-17
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 100 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 27%

Downloads

2.1K

CRAN downloads in the past year

Rank #17,590 · ~6/day · ~173/mo

Releases R versions

Daily download trend is not available in this view yet.

17430 days

61490 days

2.1K1 year

Compare downloads with other packages →

Also on65 r2u

Dependencies

Declared dependencies

21 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (22)

agricolae broom dplyr DT ggplot2 ggpubr ggraph igraphmethodsmultcompView readr reshape2 rlang rstatix shiny shinydashboardstatsTernary tibble tidyrutilsvegan

LinkingTo (0)

none

Suggests (2)

spelling testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Wang Kunguang

Author, Maintainer

Authors (1)

Wang Kunguang

Author, Maintainer

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.3Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-10-28
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1.0
Bundled data: 2.7 KB / 3 files
Download size: 529 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("easynem")

Format

Kunguang, W. (2025). easynem: Nematode Community Analysis (Version 1.0.3) [Computer software]. https://doi.org/10.32614/CRAN.package.easynem

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for easynem version 1.0.3 [Data set]. HJJB, LLC. Data release v2026-08-16. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-16, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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