R Observatory: Metrics for eSDM version 0.4.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

eSDM

0.4.4

Ensemble Tool for Predictions from Species Distribution Models

0packages depend

3.5Kdownloads / year

56.7%test coverage

13/13checks pass

Overview

About

Maintained by Sam WoodmanFirst published 2019-07-2613 releasesCRAN page ↗GitHub ↗

A tool which allows users to create and evaluate ensembles of species distribution model (SDM) predictions. Functionality is offered through R functions or a GUI (R Shiny app). This tool can assist users in identifying spatial uncertainties and making informed conservation and management decisions. The package is further described in Woodman et al (2019) doi:10.1111/2041-210X.13283.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("eSDM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("swfsc/eSDM")

Development version from swfsc/eSDM. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-esdm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-eSDM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-eSDM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 4.2 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.19

56.7%

Coverage · measured lines

100%

Documentation · exports

10

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 88%
References docs: 8%

Downloads

3.5K

CRAN downloads in the past year

Rank #10,669 · ~10/day · ~291/mo

Releases R versions

Daily download trend is not available in this view yet.

23930 days

92690 days

3.5K1 year

Compare downloads with other packages →

Also on169 r2u15 autocran

Repository

GitHub ↗ swfsc/esdm

11Stars

4Forks

4Open issues

0Open PRs

11Releases

933Commits

1Contributors

License Apache-2.0 · 933 commits · Last activity 2024-10-07

Stars over time

2024-07-05 · 112026-07-07 · 11

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/swfsc/esdm on 2026-08-09.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

Show all practices

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

26 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0.0

Imports (10)

dplyr magrittrmethodspurrr rlang ROCR sf (>= 1.0)shinystatsunits

LinkingTo (0)

none

Suggests (18)

colorRamps colourpicker dichromat DT knitr leafem leaflet maps raster RColorBrewer rmarkdown shinybusy shinydashboard shinyjs testthat tmap viridis zip

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Sam Woodman

Author, Maintainer

Authors (1)

Sam Woodman

Author, Maintainer

Package Timeline

13 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.4.4Latest
2024-10-08 · current release · diff ↗
0.4.3
2024-09-20 · diff ↗
0.4.2
2024-07-12 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.4.1
2024-02-15 · diff ↗
0.4.0
2023-10-24 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.3.7
2021-05-04 · diff ↗
0.3.5
2020-09-06 · diff ↗
0.3.4
2020-04-26 · diff ↗
R
R 4.0.0 released · 2020-04-24
0.3.3
2020-04-15 · diff ↗

Show 5 earlier events

0.3.2
2019-12-17 · diff ↗
0.3.1
2019-10-18 · diff ↗
0.3.0
2019-08-19 · diff ↗
0.2.1
2019-07-26
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2019-07-26
Total releases: 13 / 7 yrs
License: Apache License (== 2)
Minimum R: ≥ 4.0.0
Bundled data: 586 KB / 5 files
Download size: 3.5 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("eSDM")

Format

Woodman, S. (2024). eSDM: Ensemble Tool for Predictions from Species Distribution Models (Version 0.4.4) [Computer software]. https://doi.org/10.32614/CRAN.package.eSDM

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for eSDM version 0.4.4 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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