eDNAjoint
Joint Modeling of Traditional and Environmental DNA Survey Data in a Bayesian Framework
Description
Models integrate environmental DNA (eDNA) detection data and traditional survey data to jointly estimate species catch rate (see package vignette: <https://ednajoint.netlify.app/>). Models can be used with count data via traditional survey methods (i.e., trapping, electrofishing, visual) and replicated eDNA detection/nondetection data via polymerase chain reaction (i.e., PCR or qPCR) from multiple survey locations. Estimated parameters include probability of a false positive eDNA detection, a site-level covariates that scale the sensitivity of eDNA surveys relative to traditional surveys, and gear scaling coefficients for traditional gear types. Models are implemented with a Bayesian framework (Markov chain Monte Carlo) using the 'Stan' probabilistic programming language.
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (6 non-OK)
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
installed package size
installed size is 95.4Mb
sub-directories of 1Mb or more:
help 2.7Mb
libs 92.3Mb
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
installed package size
installed size is 97.5Mb
sub-directories of 1Mb or more:
help 2.7Mb
libs 94.4Mb
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
installed package size
installed size is 7.3Mb
sub-directories of 1Mb or more:
help 2.7Mb
libs 4.2Mb
Check History
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 95.4Mb
sub-directories of 1Mb or more:
help 2.7Mb
libs 92.3Mb
installed package size
installed size is 97.5Mb
sub-directories of 1Mb or more:
help 2.7Mb
libs 94.4Mb
installed package size
installed size is 7.3Mb
sub-directories of 1Mb or more:
help 2.7Mb
libs 4.2Mb