R Observatory: Metrics for dtangle version 2.0.10

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

dtangle

2.0.10Package record

Cell Type Deconvolution from Gene Expressions

0packages depend

4.3Kdownloads / year

0.0%test coverage

13/13flavors OK

Overview

About

Maintained by Gregory HuntCRAN page ↗

Deconvolving cell types from high-throughput gene profiling data. For more information on dtangle see Hunt et al. (2019) doi:10.1093/bioinformatics/bty926.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("dtangle", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-dtangle

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-dtangle

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-dtangle

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.8 min · r-release-macos-x86_64

Status changes

OK13 OK2026-08-27
NOTE13 NOTE2026-06-09
ERROR12 NOTE, 1 ERROR2026-06-08
NOTE14 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.0.10

READMENoVignettesYes · 2 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 9
Examples that run: 80%4 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 98%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (2)

Basic Deconvolution HTML
Basic Deconvolution using dtangle2 HTML

How these are measured

Downloads

4.3K

CRAN downloads in the past year

Rank #5,229 · ~12/day · ~362/mo

Releases R versions

Daily download trend is not available in this view yet.

55630 days

1.6K90 days

4.3K1 year

Compare downloads with other packages →

Also on85 r2u9 autocran1.3K conda_forge

How downloads are counted

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Installing dtangle adds 1 package (0 with compiled code, 24 KB of source tarballs). Heaviest: DEoptimR 24 KB.

Depends (1)

R >= 3.5.0

Imports (1)

DEoptimR

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Gregory Hunt

Author, Maintainer since 0.1.0 (2017)

Johann Gagnon-Bartsch

Author · added in 2.0.9

Releases (5)

Pick two releases to compare their code metrics.

2.0.10Latest
record
2026-08-21 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
2.0.9
record
2019-12-01 · diff ↗ ·
added 1 export
dtangle2
R
R 3.6.0 released · 2019-04-26
0.3.1
record
2018-11-09 · diff ↗
0.3.0
record
2018-07-05 · diff ↗ ·
removed 3 exports
baseline_exprs, est_phats, get_gamma
R
R 3.5.0 released · 2018-04-23
0.1.0
record
2017-05-30
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-05-30
Total releases: 5 / 9 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 188 KB / 1 file
Download size: 590 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("dtangle")

Format

Hunt, G., & Gagnon-Bartsch, J. (2026). dtangle: Cell Type Deconvolution from Gene Expressions (Version 2.0.10) [Computer software]. https://doi.org/10.32614/CRAN.package.dtangle

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for dtangle version 2.0.10 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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