R Observatory: Metrics for dtametaTMB version 0.1.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

dtametaTMB

0.1.3Package record

Diagnostic Test Accuracy Meta-Analysis using Template Model Builder

0packages depend

1.8Kdownloads / year

83.0%test coverage

13/13flavors OK

Overview

About

Maintained by Claus NowakCRAN page ↗GitHub ↗Issues ↗

Fits the hierarchical summary receiver operating characteristic (HSROC) model of Rutter and Gatsonis (2001) doi:10.1002/sim.942, the bivariate binomial-normal model of Reitsma et al. (2005) doi:10.1016/j.jclinepi.2005.02.022, the threshold-based bivariate time-to-event model of Hoyer et al. (2018) doi:10.1002/jrsm.1273, and the latent class extensions of Liu et al. (2015) doi:10.1111/biom.12264 for diagnostic studies with an imperfect reference standard. Provides subgroup analyses, HSROC meta-regression, likelihood-ratio tests, summary ROC plots, and coupled forest plots.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("dtametaTMB", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("EBME-UWK/dtametaTMB")

Development version from EBME-UWK/dtametaTMB. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-dtametatmb

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-dtametaTMB

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-dtametaTMB

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 13.3 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK6 OK2026-07-17

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.3

READMEYes · 149 wordsVignettesYes · 3 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 68includes a package overview page
Examples that run: 100%13 run in a plain check
Exported functions with examples: 87%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 31%

Vignettes (3)

How these are measured

Downloads

1.8K

CRAN downloads in the past year

Rank #4,901 · ~5/day · ~148/mo

Releases R versions

Daily download trend is not available in this view yet.

92530 days

1.7K90 days

1.8K1 year

Compare downloads with other packages →

Also on76 r2u2 autocran

How downloads are counted

Repository

ebme-uwk/dtametatmb ↗Organization: EBME-UWK

0Stars

0Forks

0Open issues

0Open PRs

0Releases

License file reads as GPL-2.0 · Last activity 2026-10-19 · Default branch at 0.1.3.9000, ahead of CRAN 0.1.3 (checked 2026-10-18)

Responsiveness

not measured

How these are measured

PracticesBeta

Checks run against github.com/ebme-uwk/dtametatmb on 2026-10-18.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing dtametaTMB adds 59 packages (33 with compiled code, 62 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, glmmTMB 5.2 MB.

Depends (1)

R >= 3.5

Imports (5)

forestploter glmmTMBgridsurvivalTMB

LinkingTo (2)

RcppEigen TMB

Suggests (3)

knitr quarto testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Claus Nowak

Author, Maintainer since 0.1.0 (2026)

Releases (4)

Pick two releases to compare their code metrics.

0.1.3Latest
record
2026-09-26 · current release · diff ↗
0.1.2
record
2026-08-26 · diff ↗
0.1.1
record
2026-07-26 · diff ↗ ·
added 4 exports
fitReitsmaLCA, fitReitsmaSubgroupLCA, fitRutterGatsonisLCA, fitRutterGatsonisSubgroupLCA
0.1.0
record
2026-07-16
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-07-16
Total releases: 4 / 1 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.5
Bundled data: 10 KB / 9 files
Download size: 3.0 MB

Appears in task views

Meta-Analysis

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("dtametaTMB")

Format

Nowak, C. (2026). dtametaTMB: Diagnostic Test Accuracy Meta-Analysis using Template Model Builder (Version 0.1.3) [Computer software]. https://doi.org/10.32614/CRAN.package.dtametaTMB

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for dtametaTMB version 0.1.3 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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