R Observatory: Metrics for diffusionMap version 1.2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

diffusionMap

1.2.0

Diffusion Map

2packages depend

25.5Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Robrecht CannoodtFirst published 2009-05-086 releasesCRAN page ↗GitHub ↗

Implements diffusion map method of data parametrization, including creation and visualization of diffusion map, clustering with diffusion K-means and regression using adaptive regression model. Richards (2009) doi:10.1088/0004-637X/691/1/32.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("diffusionMap", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("rcannood/diffusionMap")

Development version from rcannood/diffusionMap. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-diffusionmap

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-diffusionMap

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-diffusionMap

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 2.1 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

5

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 96%
Return-value docs: 100%
References docs: 78%

Downloads

25.5K

CRAN downloads in the past year

Rank #2,595 · ~70/day · ~2.1K/mo

Releases R versions

Daily download trend is not available in this view yet.

2.1K30 days

7.1K90 days

25.5K1 year

Compare downloads with other packages →

Also on118 r2u9 autocran1.6K conda_forge

Repository

GitHub ↗ rcannood/diffusionmap

6Stars

2Forks

0Open issues

0Open PRs

0Releases

13Commits

3Contributors

13 commits · Last activity 2019-09-10 · 0% stars, 30d

Stars over time

2024-04-14 · 52026-07-07 · 6

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/rcannood/diffusionmap on 2026-08-16.

Continuous integration (1)

Travis CI

CRAN release process (2)

cran-comments.mdrevdep/

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (5)

scatterplot3dgraphicsigraphMatrixstats

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

0indirect

dimRed dyndimred

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Robrecht Cannoodt

Author, Maintainer · added in 1.2.0

Authors (2)

Robrecht Cannoodt

Author, Maintainer · added in 1.2.0

Joseph Richards

Author

Listed in earlier versions (1)

and Ann Lee

no longer listed · 0.0-1 to 0.0-2

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.2.0Latest
2019-09-11 · current release · diff ↗
unarchivedReturned to CRAN
2019-09-11
R
R 3.6.0 released · 2019-04-26
1.1-0.1
2018-07-21 · diff ↗
orphanedOrphaned by its maintainer
2018-07-21
check problems were not corrected despite reminders
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16

Show 13 earlier events

R
R 3.1.0 released · 2014-04-10
1.1-0
2014-02-20 · diff ↗
R
R 3.0.0 released · 2013-04-03
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13
R
R 2.12.0 released · 2010-10-15
R
R 2.11.0 released · 2010-04-22
1.0-0
2009-11-22 · diff ↗
R
R 2.10.0 released · 2009-10-26
0.0-2
2009-05-10 · diff ↗
0.0-1
2009-05-08
R
R 2.9.0 released · 2009-04-17

Package metadata

First published: 2009-05-08
Total releases: 6 / 17 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 34 KB / 2 files
Download size: 50 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("diffusionMap")

Format

Cannoodt, R., & Richards, J. (2019). diffusionMap: Diffusion Map (Version 1.2.0) [Computer software]. https://doi.org/10.32614/CRAN.package.diffusionMap

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for diffusionMap version 1.2.0 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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