denim
Generate and Simulate Deterministic Compartmental Models
Description
R package to build and simulate deterministic compartmental models that can be non-Markovian. Length of stay in each compartment can be defined to follow a parametric distribution (d_exponential(), d_gamma(), d_weibull(), d_lognormal()) or a non-parametric distribution (nonparametric()). Other supported types of transition from one compartment to another includes fixed transition (constant()), multinomial (multinomial()), fixed transition probability (transprob()).
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘deSolve_to_denim.Rmd’ using rmarkdown --- finished re-building ‘deSolve_to_denim.Rmd’ --- re-building ‘denim.Rmd’ using rmarkdown Quitting from denim.Rmd:10-18 [setup] ~~~~~~~~~~~~~~~~~~~~~~ ...[truncated]... g ‘multinomial.Rmd’ --- re-building ‘nonparametric.Rmd’ using rmarkdown --- finished re-building ‘nonparametric.Rmd’ SUMMARY: processing the following files failed: ‘denim.Rmd’ ‘denim_dsl.Rmd’ Error: Vignette re-building failed. Execution halted
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
installed package size
installed size is 17.1Mb
sub-directories of 1Mb or more:
doc 2.4Mb
help 1.6Mb
libs 13.0Mb
installed package size
installed size is 17.3Mb
sub-directories of 1Mb or more:
doc 2.4Mb
help 1.6Mb
libs 13.3Mb
installed package size
installed size is 5.9Mb
sub-directories of 1Mb or more:
doc 2.4Mb
help 1.5Mb
libs 1.9Mb
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/denim.Rcheck/00install.out' for details.
installed package size
installed size is 17.1Mb
sub-directories of 1Mb or more:
doc 2.4Mb
help 1.6Mb
libs 13.0Mb
installed package size
installed size is 17.3Mb
sub-directories of 1Mb or more:
doc 2.4Mb
help 1.6Mb
libs 13.3Mb
installed package size
installed size is 5.9Mb
sub-directories of 1Mb or more:
doc 2.4Mb
help 1.5Mb
libs 1.9Mb
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 17.1Mb
sub-directories of 1Mb or more:
doc 2.4Mb
help 1.6Mb
libs 13.0Mb
installed package size
installed size is 17.3Mb
sub-directories of 1Mb or more:
doc 2.4Mb
help 1.6Mb
libs 13.3Mb
installed package size
installed size is 5.9Mb
sub-directories of 1Mb or more:
doc 2.4Mb
help 1.5Mb
libs 1.9Mb