R Observatory: Metrics for deepgp version 1.2.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

deepgp

1.2.3Package record

Bayesian Deep Gaussian Processes using MCMC

0packages depend

6.8Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Annie S. BoothCRAN page ↗

Performs Bayesian posterior inference for deep Gaussian processes following Sauer, Gramacy, and Higdon (2023, doi:10.48550/arXiv.2012.08015). See Sauer (2023, http://hdl.handle.net/10919/114845) for comprehensive methodological details and https://bitbucket.org/gramacylab/deepgp-ex/ for a variety of coding examples. Models are trained through MCMC including elliptical slice sampling of latent Gaussian layers and Metropolis-Hastings sampling of kernel hyperparameters. Gradient-enhancement and gradient predictions are offered following Booth (2026, doi:10.48550/arXiv.2512.18066). Vecchia approximation for faster computation is implemented following Sauer, Cooper, and Gramacy (2023, doi:10.48550/arXiv.2204.02904). Optional monotonic warpings are implemented following Barnett et al. (2025, doi:10.48550/arXiv.2408.01540). Downstream tasks include sequential design through active learning Cohn/integrated mean squared error (ALC/IMSE; Sauer, Gramacy, and Higdon, 2023), optimization through expected improvement (EI; Gramacy, Sauer, and Wycoff, 2022, doi:10.48550/arXiv.2112.07457), and contour location through entropy (Booth, Renganathan, and Gramacy, 2025, doi:10.48550/arXiv.2308.04420). Models extend up to three layers deep; a one layer model is equivalent to typical Gaussian process regression. Incorporates OpenMP and SNOW parallelization and utilizes C/C++ under the hood.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("deepgp", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-deepgp

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-deepgp

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-deepgp

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 12.4 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-07-31
ERROR11 OK, 2 ERROR2026-07-30
OK13 OK2026-05-12
WARNING12 OK, 1 WARNING2026-05-11

Show 3 earlier changesHide 3 earlier changes

OK14 OK2026-04-22
ERROR13 OK, 1 ERROR2026-04-18
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.2.3

READMEYes · 1,521 wordsVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 16includes a package overview page
Examples that run: 19%3 run in a plain check · 4 only when donttest examples are enabled (R CMD check --as-cran) · 9 hold no code
Exported functions with examples: 100%
Documented parameters: 99%
Return-value docs: 77%
Help pages citing references: 69%

Vignettes (1)

deepgp

How these are measured

Downloads

6.8K

CRAN downloads in the past year

Rank #5,359 · ~19/day · ~565/mo

Releases R versions

Daily download trend is not available in this view yet.

50130 days

1.5K90 days

6.8K1 year

Compare downloads with other packages →

Also on416 r2u11 autocran

How downloads are counted

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Installing deepgp adds 16 packages (9 with compiled code, 30 MB of source tarballs). Heaviest: BH 14 MB, fields 3.9 MB, spam 3.1 MB.

Depends (1)

R >= 3.6

Imports (13)

grDevicesgraphicsstatsdoParallel foreachparallelGpGp fieldsMatrixRcpp mvtnorm FNN abind

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (3)

interp knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Annie S. Booth

Author, Maintainer · added in 1.1.1

Maintainer since 0.1.0 (2020)

Listed in earlier versions (2)

Annie Sauer

no longer listed · 0.1.0 to 1.1.0

Booth

no longer listed · 1.1.3 to 1.2.3

Releases (15)

Pick two releases to compare their code metrics.

1.2.3Latest
record
2026-07-30 · current release · diff ↗
1.2.2
record
2026-07-29 · diff ↗
R
R 4.6.0 released · 2026-04-24
1.2.1
record
2026-02-09 · diff ↗
1.2.0
record
2026-01-09 · diff ↗ ·
added 2 exports
post_sample, to_vec
R
R 4.5.0 released · 2025-04-11
1.1.3
record
2024-08-19 · diff ↗
1.1.2
record
2024-04-28 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.1.1
record
2023-08-07 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.1.0
record
2022-12-15 · diff ↗ ·
added 1 export
crps
1.0.1
record
2022-06-20 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.0.0
record
2022-04-08 · diff ↗
0.3.1
record
2021-12-07 · diff ↗

Show 6 earlier eventsHide 6 earlier events

0.3.0
record
2021-11-24 · diff ↗ ·
removed 2 exports
EI, calc_K
0.2.1
record
2021-07-15 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.2.0
record
2020-12-16 · diff ↗ ·
removed 1 export
IMSPE

added 1 export
IMSE
0.1.0
record
2020-10-29
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-10-29
Total releases: 15 / 6 yrs
License: LGPL
Minimum R: ≥ 3.6
Download size: 1.2 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("deepgp")

Format

Booth, A. S. (2026). deepgp: Bayesian Deep Gaussian Processes using MCMC (Version 1.2.3) [Computer software]. https://doi.org/10.32614/CRAN.package.deepgp

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for deepgp version 1.2.3 [Data set]. HJJB, LLC. Data release v2026-10-20. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-20, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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