R Observatory: Metrics for dartRverse version 1.0.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

dartRverse

1.0.6Package record

Install and Load the 'dartRverse' Suits of Packages

0packages depend

6.6Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Bernd GruberCRAN page ↗GitHub ↗

Provides a single function that supports the installation of all packages belonging to the 'dartRverse'. The 'dartRverse' is a set of packages that work together to analyse SNP (single nuclear polymorphism) data. All packages aim to have a similar 'look and feel' and are based on the same type of data structure ('genlight'), with additional metadata for loci and individuals (samples). For more information visit the 'GitHub' pages https://github.com/green-striped-gecko/dartRverse.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("dartRverse", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("green-striped-gecko/dartRverse")

Development version from green-striped-gecko/dartRverse. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-dartrverse

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-dartRverse

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-dartRverse

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 6.4 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.6

README· In the repository, left out of the releaseVignettesNoNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 3 (1 internal)includes a package overview page
Examples that run: 100%2 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

6.6K

CRAN downloads in the past year

Rank #4,649 · ~18/day · ~547/mo

Releases R versions

Daily download trend is not available in this view yet.

54630 days

1.8K90 days

6.6K1 year

Compare downloads with other packages →

Also on119 r2u18 autocran

How downloads are counted

Repository

green-striped-gecko/dartrverse ↗Account: green-striped-gecko

12Stars

3Forks

2Open issues

0Open PRs

0Releases

150Commits

3Commit identities

150 commits · Last activity 2026-09-23 · 0% stars, 30d · Default branch at 1.2.2, ahead of CRAN 1.0.6 (checked 2026-10-11)

Responsiveness

How these are sampled

PRs merged (all time): 93%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-10-13 · 72026-07-07 · 12

How these are measured

PracticesBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/green-striped-gecko/dartrverse on 2026-10-11.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Installing dartRverse adds 98 packages (48 with compiled code, 58 MB of source tarballs). Heaviest: stringi 11 MB, bslib 5.6 MB, pak 3.8 MB.

Depends (1)

R >= 3.5

Imports (5)

cli rlang devtools RCurl httr

LinkingTo (0)

none

Suggests (6)

dartR.base dartR.data dartR.sim dartR.captive dartR.popgen dartR.spatial

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (6)

Bernd Gruber

Author, Maintainer since 0.49 (2023)

Author

Author

Author

Author

Author

Releases (4)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.0.6Latest
record
2025-02-18 · current release · diff ↗ ·
added 1 export
gl.download.binary
1.0.2
record
2024-05-24 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.51
record
2023-12-01 · diff ↗
0.49
record
2023-08-22
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-08-22
Total releases: 4 / 3 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.5
Download size: 1.6 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("dartRverse")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1111/1755-0998.12745, 10.1111/2041-210x.13918.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for dartRverse version 1.0.6 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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