R Observatory: Metrics for daiquiri version 1.2.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

daiquiri

1.2.1Package record

Data Quality Reporting for Temporal Datasets

0packages depend

8.2Kdownloads / year

95.8%test coverage

13/13flavors OK

Overview

About

Maintained by T. Phuong QuanCRAN page ↗GitHub ↗Website ↗Issues ↗Declared funder: National Institute for Health Research (NIHR)

Generate reports that enable quick visual review of temporal shifts in record-level data. Time series plots showing aggregated values are automatically created for each data field (column) depending on its contents (e.g. min/max/mean values for numeric data, no. of distinct values for categorical data), as well as overviews for missing values, non-conformant values, and duplicated rows. The resulting reports are shareable and can contribute to forming a transparent record of the entire analysis process. It is designed with Electronic Health Records in mind, but can be used for any type of record-level temporal data (i.e. tabular data where each row represents a single "event", one column contains the "event date", and other columns contain any associated values for the event).

Changes in 1.2.1

No User-facing changes

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("daiquiri", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ropensci/daiquiri")

Development version from ropensci/daiquiri. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-daiquiri

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-daiquiri

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-daiquiri

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 15.4 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.2.1

READMEYes · 682 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · mentions 1.2.1Citation fileYes · cites a publicationWebsiteYes · pkgdown

The repository also keeps web-only articles.

Cites a JOSS paper

Help pages: 13 (1 internal)includes a package overview page
Examples that run: 75%9 run in a plain check · 3 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

Walkthrough for the daiquiri package HTML

How these are measured

Downloads

8.2K

CRAN downloads in the past year

Rank #5,841 · ~22/day · ~684/mo

Releases R versions

Daily download trend is not available in this view yet.

50630 days

1.4K90 days

8.2K1 year

Compare downloads with other packages →

Also on95 r2u8 autocran

How downloads are counted

Repository

ropensci/daiquiri ↗Organization: ropensci

40Stars

5Forks

6Open issues

0Open PRs

9Releases

311Commits

7Commit identities

data-qualityinitial-data-analysisrr-packagereproducible-researchrstatstemporal-datatime-series

License file reads as GPL-3.0 · 311 commits · Last activity 2026-09-23 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 8
Median days to close, 50 most recently updated closed PRs: 4

Stars over time

2025-07-01 · 382026-07-07 · 40

How these are measured

PracticesBeta

11 development-tooling and community-health practices detected across 7 families in the upstream repository

Checks run against github.com/ropensci/daiquiri on 2026-10-21.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Governance and community (2)

Code of conduct (inherited from ropensci)Contributing guide

Docs source (3)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-09-23

pkgdown site last built 2025-10-27

Coverage (1)

Coverage reporting (Codecov)

Show all practicesHide 3 practices

Reproducibility and dev environment (1)

renv

Research and citation (1)

codemeta.json

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Installing daiquiri adds 59 packages (29 with compiled code, 43 MB of source tarballs). Heaviest: ggplot2 6.0 MB, data.table 5.7 MB, bslib 5.6 MB.

Depends (0)

none

Imports (10)

data.table readr ggplot2 scales cowplot rmarkdown reactable (>= 0.2.3)utilsstatsxfun

LinkingTo (0)

none

Suggests (7)

covr knitr testthat codemetar vdiffr shiny diffviewer

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (5)

T. Phuong Quan

Author, Maintainer since 1.0.1 (2022)

Jack Cregan

Contributor

University of Oxford

Copyright holder

National Institute for Health Research (NIHR)

Funder

Brad Cannell

Reviewer

Listed in earlier versions (1)

T. Phuong

no longer listed · 1.0.1 to 1.2.1

Releases (6)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.2.1Latest
record
2025-10-27 · current release · diff ↗
1.2.0
record
2025-06-24 · diff ↗ ·
added 1 export
field_types_advanced
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.1.1
record
2023-07-18 · diff ↗ ·
added 1 export
ft_strata
R
R 4.3.0 released · 2023-04-21
1.0.3
record
2022-12-06 · diff ↗
1.0.2
record
2022-11-21 · diff ↗
1.0.1
record
2022-11-11
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-11-11
Total releases: 6 / 4 yrs
License: GPL (>= 3) OSI
Download size: 1.0 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("daiquiri")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.21105/joss.05034.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for daiquiri version 1.2.1 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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