cumulcalib

0.1.0

Cumulative Calibration Assessment for Prediction Models

0packages depend

6.4Kdownloads / year

84.6%test coverage

13/13checks pass

Overview

About

Maintained by Mohsen SadatsafaviFirst published 2024-06-132 releasesCRAN page ↗GitHub ↗

Tools for visualization of, and inference on, the calibration of prediction models on the cumulative domain. This provides a method for evaluating calibration of risk prediction models without having to group the data or use tuning parameters (e.g., loess bandwidth). This package implements the methodology described in Sadatsafavi and Petkau (2024) doi:10.1002/sim.10138. The core of the package is cumulcalib(), which takes in vectors of binary responses and predicted risks. The package also implements non-parametric assessment of the calibration of individualized treatment effect (ITE) models using data from a randomized trial, via cumulcalibITE(), as described in Sadatsafavi et al. (2025) doi:10.48550/arXiv.2512.08140. The plot() and summary() methods are implemented for the results returned by cumulcalib() and cumulcalibITE().

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("cumulcalib", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("resplab/cumulcalib")

Development version from resplab/cumulcalib. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-cumulcalib

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-cumulcalib

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-cumulcalib

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 6.0 min · r-release-macos-x86_64

Code health

Yes

Tests · ratio 0.36

84.6%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 124 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 94%
Return-value docs: 100%
References docs: 0%

Downloads

6.4K

CRAN downloads in the past year

Rank #7,385 · ~18/day · ~535/mo

Releases R versions

Daily download trend is not available in this view yet.

32030 days

1.4K90 days

6.4K1 year

Compare downloads with other packages →

Also on103 r2u9 autocran

Repository

GitHub ↗ resplab/cumulcalib

3Stars

1Forks

0Open issues

0Open PRs

2Releases

39Commits

3Contributors

39 commits · Last activity 2026-07-24 · +50% stars, 30d

Stars over time

2024-06-05 · 12026-07-07 · 3

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/resplab/cumulcalib on 2026-07-26.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (2)

graphicsstats

LinkingTo (0)

none

Suggests (6)

knitr predtools rmarkdown markdown spelling testthat (>= 3.0.0)

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Mohsen Sadatsafavi

Author, Maintainer

Authors (1)

Mohsen Sadatsafavi

Author, Maintainer

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

0.1.0Latest
2026-07-25 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
0.0.1
2026-03-10
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2024-06-13
Total releases: 2 / 2 yrs
License: MIT + file LICENSE OSI
Download size: 57 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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