csmGmm

0.5.0

Conditionally Symmetric Multidimensional Gaussian Mixture Model

0packages depend

5.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Ryan SunFirst published 2024-12-033 releasesCRAN page ↗

Implements the conditionally symmetric multidimensional Gaussian mixture model (csmGmm) for large-scale testing of composite null hypotheses in genetic association applications such as mediation analysis, pleiotropy analysis, and replication analysis. In such analyses, we typically have J sets of K test statistics where K is a small number (e.g. 2 or 3) and J is large (e.g. 1 million). For each one of the J sets, we want to know if we can reject all K individual nulls. Please see the vignette for a quickstart guide. The paper describing these methods is "Testing a Large Number of Composite Null Hypotheses Using Conditionally Symmetric Multidimensional Gaussian Mixtures in Genome-Wide Studies" by Sun R, McCaw Z, & Lin X (Journal of the American Statistical Association 2025, doi:10.1080/01621459.2024.2422124).

Install

R (CRAN)Ubuntu (r2u)openSUSE (OBS)

install.packages("csmGmm", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-csmgmm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-csmGmm

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 6.7 min · r-devel-linux-x86_64-fedora-clang

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

Documentation signals are not tracked yet for this package.

Downloads

5.3K

CRAN downloads in the past year

Rank #8,329 · ~15/day · ~443/mo

csmGmm Releases R versions

Daily download trend is not available in this view yet.

27430 days

1.3K90 days

5.3K1 year

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Also on109 r2u24 autocran

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (9)

dplyr mvtnorm curl data.table ggplot2 rlang magrittrstatsutils

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown R.utils

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Ryan Sun

Author, Maintainer

Authors (2)

Ryan Sun

Author, Maintainer

Emily Kim

Author · added in 0.5.0

Package Timeline

3 releases. R releases are shown for context.

0.5.0Latest
2026-06-16 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
0.4.0
2025-09-16 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.3.0
2024-12-03
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-12-03
Total releases: 3 / 2 yrs
License: GPL-3 OSI
Download size: 28 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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