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csalert

Alerts from Public Health Surveillance Data

v2024.6.24 · Jun 24, 2024 · MIT + file LICENSE

Description

Helps create alerts and determine trends by using various methods to analyze public health surveillance data. The primary analysis method is based upon a published analytics strategy by Benedetti (2019) <doi:10.5588/pha.19.0002>.

Downloads

CRAN

684

Last 30 days

4908th

2.1K

Last 90 days

8.5K

Last year

Trend: -0.2% (30d vs prior 30d)

r2u CRAN

0

Last 30 days

24

Last 90 days

103

Last year

Trend: -100% (30d vs prior 30d)

autoCRAN

3

Last 7 days

11

Last 30 days

0

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Code

Structure

Lines of code

1,913

Files

28

Compiled share

0%

Has compiled src

No

Language breakdown

R 1,340 (70%)Docs 390 (20.4%)Vignettes 183 (9.6%)

API

Exported functions

7

Internal functions

11

Recent export changes

v2024.6.24+6 add_holiday_effect, short_term_trend_sts_v1, signal_detection_hlm +3 more
v2023.6.17+1 short_term_trend

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

100%

\dontrun example ratio

0%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

Yes

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.3.0

System requirements

C++ standard

License

MIT + file LICENSE

License flags

SPDX valid, OSI approved

History

Versions

2

First release

2023-06-15

Latest release

2024-06-24

Avg cadence

375 days

Cold removal rate

Dep drift

2

LOC over versions

v2023.6.17: 825 LOCv2024.6.24: 1,913 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Dependency Network

Dependencies Reverse dependencies data.table magrittr ggplot2 glm2 cstidy cstime lubridate stringr surveillance csalert

Version History

3 tracked
new 2024.6.24 Mar 10, 2026
updated 2024.6.24 ← 2023.6.17 diff Jun 23, 2024
new 2023.6.17 Jun 14, 2023