R Observatory: Metrics for countdata version 1.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

countdata

1.3

The Beta-Binomial Test for Count Data

0packages depend

3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Thang PhamFirst published 2021-01-273 releasesCRAN page ↗

The beta-binomial test is used for significance analysis of independent samples by Pham et al. (2010) doi:10.1093/bioinformatics/btp677. The inverted beta-binomial test is used for paired sample testing, e.g. pre-treatment and post-treatment data, by Pham and Jimenez (2012) doi:10.1093/bioinformatics/bts394.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("countdata", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-countdata

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-countdata

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-countdata

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.2 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

0

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 100%

Downloads

3K

CRAN downloads in the past year

Rank #14,150 · ~8/day · ~248/mo

Releases R versions

Daily download trend is not available in this view yet.

14630 days

74790 days

3K1 year

Compare downloads with other packages →

Also on401 r2u42 autocran

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (0)

none

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Thang Pham

Author, Maintainer, Copyright holder, Contributor

Authors (1)

Thang Pham

Author, Maintainer, Copyright holder, Contributor

Contributors (1)

Thang Pham

Author, Maintainer, Copyright holder, Contributor

Copyright holders (1)

Thang Pham

Author, Maintainer, Copyright holder, Contributor

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.3Latest
2023-03-09 · current release · diff ↗
R
R 4.2.0 released · 2022-04-22
1.2
2021-09-14 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.1
2021-01-27
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-01-27
Total releases: 3 / 5 yrs
License: BSD_3_clause + file LICENSE OSI
Minimum R: ≥ 2.10
Download size: 604 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("countdata")

Format

Pham, T. (2023). countdata: The Beta-Binomial Test for Count Data (Version 1.3) [Computer software]. https://doi.org/10.32614/CRAN.package.countdata

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for countdata version 1.3 [Data set]. HJJB, LLC. Data release v2026-08-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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