cosinor2

0.2.1

Extended Tools for Cosinor Analysis of Rhythms

3packages depend

150.4Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Augustin MutakFirst published 2017-08-213 releasesCRAN page ↗GitHub ↗

Statistical procedures for calculating population–mean cosinor, non–stationary cosinor, estimation of best–fitting period, tests of population rhythm differences and more. See Cornélissen, G. (2014). doi:10.1186/1742-4682-11-16.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("cosinor2", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("amutak/cosinor2")

Development version from amutak/cosinor2. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-cosinor2

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-cosinor2

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-cosinor2

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 2.8 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-06-09
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
11 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 29%
References docs: 69%

Downloads

150.4K

CRAN downloads in the past year

Rank #3,387 · ~412/day · ~12.5K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.5K30 days

3.5K90 days

150.4K1 year

Compare downloads with other packages →

Also on231 r2u25 autocran28 c2d4u

Repository

GitHub ↗ amutak/cosinor2

5Stars

2Forks

1Open issues

0Open PRs

1Releases

18Commits

1Contributors

18 commits · Last activity 2018-10-15

Stars over time

2024-11-01 · 52026-07-07 · 5

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/amutak/cosinor2 on 2026-07-19.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Depends (2)

R >= 2.10cosinor

Imports (8)

cowplot scales magrittr stringr purrr ggplot2 matrixStats Hmisc

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

3direct

2indirect

ActCR mMARCH.AC matrixTests

Code & Tests

Code Composition

R 803 (55%)Rd 424 (29%)Vignettes 245 (17%)

Code characteristics

Cyclomatic complexity: 5.0 median / 27 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

7 7 exported

Complexity

7.7 avg / 27 max

Call network

7 nodes / 7 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 6

Name	Class	Rows × Cols	Also ships in
PANAS_november	data.frame	19 × 30	–
PANAS_time	vector	–	–
PA_extraverts	data.frame	24 × 6	–
PA_introverts	data.frame	29 × 6	–
PA_time	vector	–	–
temperature_zg	data.frame	48 × 2	–

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (1)

Augustin Mutak

no longer listed · 0.1.0 to 0.2.1

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.2.1Latest
2018-10-15 · current release · diff ↗
0.2.0
2018-10-01 · diff ↗
unarchivedReturned to CRAN
2018-10-01
archivedRemoved from CRAN
2018-08-13
check problems were not corrected despite reminders
R
R 3.5.0 released · 2018-04-23
0.1.0
2017-08-21
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-08-21
Total releases: 3 / 9 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 4.0 KB / 6 files
Download size: 95 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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