R Observatory: Metrics for cosimmr version 1.0.12

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

cosimmr

1.0.12Package record

Fast Fitting of Stable Isotope Mixing Models with Covariates

0packages depend

6.6Kdownloads / year

33.2%test coverage

13/13flavors OK

Overview

About

Maintained by Emma GovanCRAN page ↗GitHub ↗Website ↗

Fast fitting of Stable Isotope Mixing Models in R. Allows for the inclusion of covariates. Also has built-in summary functions and plot functions which allow for the creation of isospace plots. Variational Bayes is used to fit these models, methods as described in: Tran et al., (2021) doi:10.48550/arXiv.2103.01327.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("cosimmr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("emmagovan/cosimmr")

Development version from emmagovan/cosimmr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-cosimmr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-cosimmr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-cosimmr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 6.2 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-04-22
ERROR13 OK, 1 ERROR2026-04-18
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.12

README· In the repository, left out of the releaseVignettesYes · 2 · dynamicNEWSNoCitation fileNoWebsiteYes · pkgdown

Help pages: 21includes a package overview page
Examples that run: 0%10 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 80%
Documented parameters: 76%
Return-value docs: 100%
Help pages citing references: 10%

Vignettes (2)

How these are measured

Downloads

6.6K

CRAN downloads in the past year

Rank #9,092 · ~18/day · ~553/mo

Releases R versions

Daily download trend is not available in this view yet.

38230 days

1.1K90 days

6.6K1 year

Compare downloads with other packages →

Also on360 r2u20 autocran

How downloads are counted

Repository

emmagovan/cosimmr ↗Account: emmagovan

1Stars

0Forks

0Open issues

0Open PRs

0Releases

77Commits

1Commit identities

77 commits · Last activity 2024-09-04 · Default branch at 1.1.01, ahead of CRAN 1.0.12 (checked 2026-10-18)

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: 22

Stars over time

2025-03-18 · 12026-07-07 · 1

How these are measured

PracticesBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/emmagovan/cosimmr on 2026-10-18.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux

Docs source (1)

GitHub Pages site last deployed 2024-09-04

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Installing cosimmr adds 53 packages (27 with compiled code, 47 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, bayesplot 5.0 MB.

Depends (1)

R >= 3.5.0

Imports (9)

Rcpp R2jags bayesplot checkmate ggplot2 viridis reshape2statsggnewscale

LinkingTo (3)

Rcpp RcppArmadillo RcppDist

Suggests (4)

testthat knitr rmarkdown readxl

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Emma Govan

Maintainer since 1.0.11 (2024), Author

Andrew Parnell

Author

Alan Inglis

Contributor

Ahmed Shalaby

Contributor

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.0.12Latest
record
2024-05-31 · current release · diff ↗
1.0.11
record
2024-05-28
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-05-28
Total releases: 2 / 2 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.5.0
Bundled data: 19 KB / 8 files
Download size: 156 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("cosimmr")

Format

Govan, E., Inglis, A., Parnell, A., & Shalaby, A. (2024). cosimmr: Fast Fitting of Stable Isotope Mixing Models with Covariates (Version 1.0.12) [Computer software]. https://doi.org/10.32614/CRAN.package.cosimmr

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for cosimmr version 1.0.12 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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