R Observatory: Metrics for corrcoverage version 1.2.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2025-09-17. Its history is shown below.

Reason: email to the maintainer is undeliverable

Details below reflect version 1.2.1, its last release before removal.

corrcoverage

1.2.1

Correcting the Coverage of Credible Sets from Bayesian Genetic Fine Mapping

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Anna Hutchinson4 releasesCRAN page ↗

Using a computationally efficient method, the package can be used to find the corrected coverage estimate of a credible set of putative causal variants from Bayesian genetic fine-mapping. The package can also be used to obtain a corrected credible set if required; that is, the smallest set of variants required such that the corrected coverage estimate of the resultant credible set is within some user defined accuracy of the desired coverage. Maller et al. (2012) doi:10.1038/ng.2435, Wakefield (2009) doi:10.1002/gepi.20359, Fortune and Wallace (2018) doi:10.1093/bioinformatics/bty898.

Install

R (source archive)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/corrcoverage/corrcoverage_1.2.1.tar.gz"
pkgFile <- "corrcoverage_1.2.1.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.2.1) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-corrcoverage

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-corrcoverage

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.19

not tracked

Coverage

96%

Documentation · exports

5

Dependencies · direct

Documentation

READMEYes · 626 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 82%
Documented parameters: 100%
Return-value docs: 96%
References docs: 0%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on396 r2u16 autocran

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (5)

data.table magrittrstatsmatrixStats Rcpp

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (7)

covr dplyr knitr mvtnorm rmarkdown testthat pkgdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Anna Hutchinson

Author, Maintainer

Authors (2)

Anna Hutchinson

Author, Maintainer

Chris Wallace

Author

Contributors (1)

Kevin Kunzmann

Contributor

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2025-09-17
email to the maintainer is undeliverable
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.2.1
2019-12-06 · diff ↗
1.2.0
2019-12-05 · diff ↗
1.1.0
2019-09-05 · diff ↗
1.0.0
2019-08-28
R
R 3.6.0 released · 2019-04-26

Package metadata

Total releases: 4
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("corrcoverage")

Format

Hutchinson, A., Wallace, C., & Kunzmann, K. (n.d.). corrcoverage: Correcting the Coverage of Credible Sets from Bayesian Genetic Fine Mapping (Version 1.2.1) [Computer software]. Retrieved August 15, 2026, from https://CRAN.R-project.org/package=corrcoverage

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for corrcoverage version 1.2.1 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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