corHMM
Hidden Markov Models of Character Evolution
v2.8
·
Jun 13, 2022
·
GPL (>= 2)
Description
Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.
Downloads
657
Last 30 days
5256th
2.1K
Last 90 days
17.6K
Last year
Trend: -0.2% (30d vs prior 30d)
CRAN Check Status
13
OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
re-building of vignette outputs
Error(s) in re-building vignettes: ... Fatal error: cannot create 'R_TempDir'
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 30, 2026
ERROR
r-oldrel-windows-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'corHMMv2.1-vignette.Rmd' using rmarkdown Warning in eng_r(options) : Failed to tidy R code in chunk 'unnamed-chunk-1'. Reason: Error : The formatR package is required by the chunk option tidy = TR ...[truncated]... ebugging for debugging tips. See corHMMv2.1-vignette.log for more info. --- failed re-building 'corHMMv2.1-vignette.Rmd' SUMMARY: processing the following file failed: 'corHMMv2.1-vignette.Rmd' Error: Vignette re-building failed. Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
Reverse Dependencies (2)
imports
suggests
Dependency Network
Version History
21 tracked
new
2.8
Mar 10, 2026