corHMM
Hidden Markov Models of Character Evolution
v2.8
·
Jun 13, 2022
·
GPL (>= 2)
Description
Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.
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1
ERROR
13
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Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | ERROR |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (1 non-OK)
ERROR
r-oldrel-windows-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'corHMMv2.1-vignette.Rmd' using rmarkdown Warning in eng_r(options) : Failed to tidy R code in chunk 'unnamed-chunk-1'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) : Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) : Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) : Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) : Failed to tidy R code in chunk 'unnamed-c ...[truncated]... (options) : Failed to tidy R code in chunk 'unnamed-chunk-51'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. Warning in eng_r(options) : Failed to tidy R code in chunk 'unnamed-chunk-52'. Reason: Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored. ! Package pdftex.def Error: File `98ffb3cd3bec50e724eebf1c8dbab0117446afe6.pdf' not found: using draft setting. Error: processing vignette 'corHMMv2.1-vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/corHMM.Rcheck/vign_test/corHMM/vignettes/corHMMv2.1-vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See corHMMv2.1-vignette.log for more info. --- failed re-building 'corHMMv2.1-vignette.Rmd' SUMMARY: processing the following file failed: 'corHMMv2.1-vignette.Rmd' Error: Vignette re-building failed. Execution halted
Check History
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 30, 2026
ERROR
r-oldrel-windows-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'corHMMv2.1-vignette.Rmd' using rmarkdown Warning in eng_r(options) : Failed to tidy R code in chunk 'unnamed-chunk-1'. Reason: Error : The formatR package is required by the chunk option tidy = TR ...[truncated]... ebugging for debugging tips. See corHMMv2.1-vignette.log for more info. --- failed re-building 'corHMMv2.1-vignette.Rmd' SUMMARY: processing the following file failed: 'corHMMv2.1-vignette.Rmd' Error: Vignette re-building failed. Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
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2.8
Mar 10, 2026