concatipede
Easy Concatenation of Fasta Sequences
Description
Concatenation of multiple sequence alignments based on a correspondence table that can be edited in Excel <doi:10.5281/zenodo.5130603>.
Downloads
269
Last 30 days
18037th
711
Last 90 days
2.9K
Last year
Trend: +48.6% (30d vs prior 30d)
1
Last 30 days
29
Last 90 days
128
Last year
Trend: -92.3% (30d vs prior 30d)
5
Last 7 days
17
Last 30 days
2
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘Package-usage.Rmd’ using rmarkdown Warning in in_dir(input_dir(), expr) : You changed the working directory to /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/concatipede.Rcheck/vign_test/con ...[truncated]... 'Package-usage.Rmd' failed with diagnostics: there is no package called 'tidyverse' --- failed re-building ‘Package-usage.Rmd’ SUMMARY: processing the following file failed: ‘Package-usage.Rmd’ Error: Vignette re-building failed. Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
Code
Structure
Lines of code
2,076
Files
62
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
12
Internal functions
11
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.32
testthat edition
3
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
100%
\dontrun example ratio
16.7%
Roxygen coverage
91.7%
Has pkgdown
No
NEWS present
Yes
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
1
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
1
First release
2021-08-06
Latest release
2021-08-06
Avg cadence
–
Cold removal rate
–
Dep drift
0
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.
Dependency Network
Version History
1 trackedR Observatory began tracking this package on Mar 10, 2026; it first appeared on CRAN Aug 6, 2021. Releases before tracking aren’t shown.