R Observatory: Metrics for conStruct version 1.0.7

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

conStruct

1.0.7Package record

Models Spatially Continuous and Discrete Population Genetic Structure

0packages depend

4.4Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Gideon BradburdCRAN page ↗

A method for modeling genetic data as a combination of discrete layers, within each of which relatedness may decay continuously with geographic distance. This package contains code for running analyses (which are implemented in the modeling language 'rstan') and visualizing and interpreting output. See the paper for more details on the model and its utility.

Changes in 1.0.7

Minor changes

fixed minor bug in calculating covariance
allows user-specified sizes of pdfs produced by compare.two.runs

From NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("conStruct", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-construct

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-conStruct

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-conStruct

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 18.8 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-07-29
ERROR12 OK, 1 ERROR2026-07-27
OK12 OK2026-04-25

Show 3 earlier changesHide 3 earlier changes

NOTE11 OK, 3 NOTE2026-04-22
ERROR10 OK, 3 NOTE, 1 ERROR2026-04-18
NOTE11 OK, 3 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.7

READMENoVignettesYes · 4 · dynamicNEWSYes · 100% structured · mentions 1.0.7Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 16includes a package overview page
Examples that run: 100%4 run in a plain check
Exported functions with examples: 44%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 6%

Vignettes (4)

How these are measured

Downloads

4.4K

CRAN downloads in the past year

Rank #5,923 · ~12/day · ~363/mo

Releases R versions

Daily download trend is not available in this view yet.

42330 days

1.4K90 days

4.4K1 year

Compare downloads with other packages →

Also on407 r2u16 autocran

How downloads are counted

Dependencies

Declared dependencies

16 external dependencies (excludes base and recommended)

Installing conStruct adds 53 packages (23 with compiled code, 46 MB of source tarballs). Heaviest: BH 14 MB, ggplot2 6.0 MB, loo 2.7 MB.

Depends (3)

R >= 3.4.0Rcppmethods

Imports (7)

rstan rstantools caroline gtools foreachparalleldoParallel

LinkingTo (6)

StanHeaders rstan BH Rcpp RcppEigen RcppParallel (>= 5.0.1)

Suggests (3)

knitr rmarkdown maps

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Gideon Bradburd

Author, Maintainer since 1.0.0 (2018)

Releases (8)

Pick two releases to compare their code metrics.

1.0.7Latest
record
2026-08-28 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.6
record
2024-01-08 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.0.5
record
2023-03-17 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.0.4
record
2019-12-12 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.0.3
record
2019-01-03 · diff ↗
1.0.2
record
2018-11-08 · diff ↗
1.0.1
record
2018-10-20 · diff ↗
1.0.0
record
2018-09-19

Show 1 earlier eventHide 1 earlier event

R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-09-19
Total releases: 8 / 8 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.4.0
Bundled data: 56 KB / 2 files
Download size: 527 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("conStruct")

Format

Bradburd, G. (2026). conStruct: Models Spatially Continuous and Discrete Population Genetic Structure (Version 1.0.7) [Computer software]. https://doi.org/10.32614/CRAN.package.conStruct

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for conStruct version 1.0.7 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →