R Observatory: Metrics for comradesOO version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2024-05-14. Its history is shown below.

Reason: requires archived package 'RRNA'

Details below reflect version 0.1.1, its last release before removal.

comradesOO

0.1.1Package record

Analysis of COMRADES (Cross-Linking Matched RNA and Deep Sequencing) Data

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Jonathan PriceCRAN page ↗

Analysis of RNA crosslinking data for RNA structure prediction. The package is suitable for the analysis of RNA structure cross-linking data and chemical probing data.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/comradesOO/comradesOO_0.1.1.tar.gz"
pkgFile <- "comradesOO_0.1.1.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.1) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.1

READMEYes · 655 wordsVignettesYes · 1 · dynamicNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 48 (1 internal)includes a package overview page
Examples that run: 85%29 run in a plain check · 5 never run
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

comradesOO Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on72 r2u

How downloads are counted

Dependencies

Declared dependencies

20 external dependencies (excludes base and recommended)

Depends (3)

seqinr GenomicRangesstats

Imports (20)

ggplot2 reshape2MASSmixtoolsutilsS4Vectors doParallel igraph R4RNA RColorBrewer IRanges foreachgrDevicesheatmap3 TopDom tidyverse RRNA ggrepelmethodsparallel

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Jonathan Price

Author, Maintainer since 0.1.0 (2023)

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.5.0 released · 2025-04-11
archivedRemoved from CRAN
2024-05-14
requires archived package 'RRNA'
R
R 4.4.0 released · 2024-04-24
0.1.1
record
2023-11-10 · diff ↗
0.1.0
record
2023-11-02
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-11-02
Total releases: 2 / 3 yrs
License: GPL-3 OSI

Cite

Cite this package

Run in R for the authors' entry:

citation("comradesOO")

The package provides a citation file, so citation() returns the authors' own entry.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for comradesOO version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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