codyn

Community Dynamics Metrics

v2.0.5 · Nov 30, 2020 · Apache License (== 2.0)

Description

Univariate and multivariate temporal and spatial diversity indices, rank abundance curves, and community stability measures. The functions implement measures that are either explicitly temporal and include the option to calculate them over multiple replicates, or spatial and include the option to calculate them over multiple time points. Functions fall into five categories: static diversity indices, temporal diversity indices, spatial diversity indices, rank abundance curves, and community stability measures. The diversity indices are temporal and spatial analogs to traditional diversity indices. Specifically, the package includes functions to calculate community richness, evenness and diversity at a given point in space and time. In addition, it contains functions to calculate species turnover, mean rank shifts, and lags in community similarity between two time points. Details of the methods are available in Hallett et al. (2016) <doi:10.1111/2041-210X.12569> and Avolio et al. (2019) <doi:10.1002/ecs2.2881>.

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CRAN Check Status

14 NOTE

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	163.5s
r-devel-linux-x86_64-debian-gcc	NOTE	110.6s
r-devel-linux-x86_64-fedora-clang	NOTE	252.5s
r-devel-linux-x86_64-fedora-gcc	NOTE	261.8s
r-devel-macos-arm64	NOTE	41s
r-devel-windows-x86_64	NOTE	162s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	119s
r-oldrel-windows-x86_64	NOTE	210s
r-patched-linux-x86_64	NOTE	153.6s
r-release-linux-x86_64	NOTE	151.2s
r-release-macos-arm64	NOTE
r-release-macos-x86_64	NOTE	159s
r-release-windows-x86_64	NOTE	161s

Check details (14 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:58-61: Lost brac
...[truncated]...
mize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:58-61: Lost brac
...[truncated]...
mize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:58-61: Lost brac
...[truncated]...
mize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:58-61: Lost brac
...[truncated]...
mize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:58-61: Lost brac
...[truncated]...
mize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:58-61: Lost brac
...[truncated]...
mize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:58-61: Lost brac
...[truncated]...
mize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:58-61: Lost brac
...[truncated]...
mize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:58-61: Lost brac
...[truncated]...
mize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:58-61: Lost brac
...[truncated]...
mize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:58-61: Lost brac
...[truncated]...
mize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:58-61: Lost brac
...[truncated]...
mize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:58-61: Lost brac
...[truncated]...
mize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_difference.Rd:58-61: Lost brac
...[truncated]...
mize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) turnover.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) turnover.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

Check History

NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \v
...[truncated]...
: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \v
...[truncated]...
: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \v
...[truncated]...
: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \v
...[truncated]...
: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \v
...[truncated]...
: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \v
...[truncated]...
: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \v
...[truncated]...
: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \v
...[truncated]...
: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \v
...[truncated]...
: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \v
...[truncated]...
: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \v
...[truncated]...
: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \v
...[truncated]...
: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \v
...[truncated]...
: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \v
...[truncated]...
: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly

Dependency Network

Version History

new 2.0.5 Mar 10, 2026

updated 2.0.5 ← 2.0.4 diff Nov 30, 2020

updated 2.0.4 ← 2.0.3 diff May 5, 2020

updated 2.0.3 ← 2.0.2 diff Sep 16, 2019

updated 2.0.2 ← 2.0.1 diff Apr 8, 2019

updated 2.0.1 ← 2.0.0 diff Mar 7, 2019

updated 2.0.0 ← 1.1.0 diff Jun 11, 2018

updated 1.1.0 ← 1.0.1 diff Apr 26, 2016

updated 1.0.1 ← 1.0.0 diff Jan 14, 2016

new 1.0.0 Oct 19, 2015

Maintainer

Matthew B. Jones

Dependencies

Depends

R (>= 3.2.0)

Imports

assertthat stats permute vegan

Suggests

testthat knitr ggplot2 pillar reshape2 devtools dplyr rmarkdown

Compilation

No compilation needed

First Published

Oct 19, 2015

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CRAN Checks

View on CRAN →