clustra
Clustering Longitudinal Trajectories
Description
Clusters longitudinal trajectories over time (can be unequally spaced, unequal length time series and/or partially overlapping series) on a common time axis. Performs k-means clustering on a single continuous variable measured over time, where each mean is defined by a thin plate spline fit to all points in a cluster. Distance is MSE across trajectory points to cluster spline. Provides graphs of derived cluster splines, silhouette plots, and Adjusted Rand Index evaluations of the number of clusters. Scales well to large data with multicore parallelism available to speed computation.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
WARNING 12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE Jun 8, 2026
Rd files
cannot open the connection cannot open the connection cannot open the connection cannot open the connection cannot open the connection cannot open the connection cannot open the connection cannot open the connection cannot open the connection problems found in ‘ic_fun.Rd’, ‘kchoose.Rd’, ‘mse_g.Rd’, ‘oneid.Rd’, ‘plot_sample.Rd’, ‘plot_silhouette.Rd’, ‘plot_smooths.Rd’, ‘pred_g.Rd’, ‘rand_plot.Rd’
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 30, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 10, 2026
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building ‘clustra_bp_vignette.Rmd’ using rmarkdown *** caught segfault *** address 0x110, cause 'invalid permissions' *** caught segfault *** address 0x110, cause 'invalid permissions' Traceback: 1: Pre ...[truncated]... th diagnostics: dim(X) must have a positive length --- failed re-building ‘clustra_vignette.Rmd’ SUMMARY: processing the following files failed: ‘clustra_bp_vignette.Rmd’ ‘clustra_vignette.Rmd’ Error: Vignette re-building failed. Execution halted