R Observatory: Metrics for clusterGGM version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

clusterGGM

0.1.1Package record

Sparse Gaussian Graphical Modeling with Variable Clustering

0packages depend

2.3Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Andreas AlfonsCRAN page ↗GitHub ↗Issues ↗

Perform sparse estimation of a Gaussian graphical model (GGM) with node aggregation through variable clustering. Currently, the package implements the clusterpath estimator of the Gaussian graphical model (CGGM) (Touw, Alfons, Groenen & Wilms, 2025; doi:10.48550/arXiv.2407.00644).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("clusterGGM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("aalfons/clusterGGM")

Development version from aalfons/clusterGGM. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-clusterggm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-clusterGGM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-clusterGGM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 4.8 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK12 OK2026-04-25
NOTE12 OK, 2 NOTE2026-04-22
ERROR11 OK, 2 NOTE, 1 ERROR2026-04-18

Show 1 earlier changeHide 1 earlier change

NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.1

READMEYes · 240 wordsVignettesNoNEWSYes · 33% structuredCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 10includes a package overview page
Examples that run: 89%8 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 90%

How these are measured

Downloads

2.3K

CRAN downloads in the past year

Rank #20,326 · ~6/day · ~191/mo

Releases R versions

Daily download trend is not available in this view yet.

21330 days

65990 days

2.3K1 year

Compare downloads with other packages →

Also on407 r2u11 autocran

How downloads are counted

Repository

aalfons/clusterggm ↗Account: aalfons

1Stars

0Forks

4Open issues

0Open PRs

0Releases

191Commits

3Commit identities

License file reads as GPL-3.0 · 191 commits · Last activity 2026-10-17 · 0% stars, 30d · Default branch at 0.2.0, ahead of CRAN 0.1.1 (checked 2026-10-25)

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 351
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2026-07-07 · 02026-08-23 · 1

How these are measured

PracticesBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/aalfons/clusterggm on 2026-10-25.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Installing clusterGGM adds 17 packages (11 with compiled code, 8.7 MB of source tarballs). Heaviest: Rcpp 1.8 MB, RcppEigen 1.7 MB, vctrs 1.0 MB.

Depends (1)

R >= 3.5.0

Imports (5)

Rcpp dplyrparallelrlangstats

LinkingTo (2)

Rcpp RcppEigen

Suggests (1)

mvtnorm

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (4)

Andreas Alfons

Author, Maintainer since 0.1.0 (2025)

Daniel J.W. Touw

Author

Ines Wilms

Author

Patrick J.F. Groenen

Thesis advisor

PhD advisor of Daniel J.W. Touw

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.1.1Latest
record
2025-10-22 · current release · diff ↗
0.1.0
record
2025-10-17
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-10-17
Total releases: 2 / 1 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.5.0
Download size: 52 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("clusterGGM")

Format

Alfons, A., Groenen, P. J. F., Touw, D. J. W., & Wilms, I. (2025). clusterGGM: Sparse Gaussian Graphical Modeling with Variable Clustering (Version 0.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.clusterGGM

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for clusterGGM version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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