R Observatory: Metrics for clustTMB version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

clustTMB

0.1.0

Spatio-Temporal Finite Mixture Model using 'TMB'

0packages depend

2.5Kdownloads / year

76.0%test coverage

11/13checks pass

Overview

About

Maintained by Andrea M. HavronFirst published 2024-10-141 releasesCRAN page ↗GitHub ↗

Fits a spatio-temporal finite mixture model using 'TMB'. Covariate, spatial and temporal random effects can be incorporated into the gating formula using multinomial logistic regression, the expert formula using a generalized linear mixed model framework, or both.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("clustTMB", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Andrea-Havron/clustTMB")

Development version from Andrea-Havron/clustTMB. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-clusttmb

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-clustTMB

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-clustTMB

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2ERROR11OK

Failing flavors

ERROR r-devel-linux-x86_64-fedora-clang
ERROR r-devel-linux-x86_64-fedora-gcc

Slowest check: 100.8 min · r-devel-linux-x86_64-fedora-gcc

Code health

Yes

Tests · ratio 1.19

76.0%

Coverage · measured lines

100%

Documentation · exports

12

Dependencies · direct

Check history

ERROR2026-03-10
10 OK · 2 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE

Documentation

READMEYes · 163 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 90%
Return-value docs: 100%
References docs: 0%

Downloads

2.5K

CRAN downloads in the past year

Rank #15,948 · ~7/day · ~204/mo

Releases R versions

Daily download trend is not available in this view yet.

18130 days

66290 days

2.5K1 year

Compare downloads with other packages →

Also on405 r2u23 autocran

Repository

GitHub ↗ andrea-havron/clusttmb

5Stars

2Forks

6Open issues

2Open PRs

0Releases

370Commits

6Contributors

370 commits · Last activity 2024-10-09

Stars over time

2025-06-11 · 42026-07-07 · 5

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/andrea-havron/clusttmb on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Show all practices

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

36 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0.0

Imports (12)

clusterclustMixType fmesher lme4Matrixmclustmethodsreformulas MoEClust sfstatsTMB

LinkingTo (2)

RcppEigen TMB

Suggests (26)

bookdown covr cowplot dplyr FMsmsnReg GGally ggplot2 ggspatial giscoR inlabru kableExtra knitr magrittr MixSim mvnfast mvtnorm palmerpenguins rmarkdown sdmTMB sp spData splancs testthat tidyr tweedie wesanderson

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Andrea M. Havron

Author, Maintainer, Copyright holder

Authors (1)

Andrea M. Havron

Author, Maintainer, Copyright holder

Copyright holders (1)

Andrea M. Havron

Author, Maintainer, Copyright holder

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2024-10-14
Total releases: 1 / 2 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.0.0
Download size: 168 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("clustTMB")

Format

Havron, A. M. (2024). clustTMB: Spatio-Temporal Finite Mixture Model using 'TMB' (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.clustTMB

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for clustTMB version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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