R Observatory: Metrics for clis version 0.3.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

clis

0.3.6Package record

Conformal Local Influence Screening for Bounded-Response Regression

0packages depend

269downloads / year

39.8%test coverage

13/13flavors OK

Overview

About

Maintained by Raydonal OspinaCRAN page ↗GitHub ↗Website ↗Issues ↗

Provides fast, statistically calibrated influence diagnostics for zero-or-one inflated beta (BIc) regression models with variable dispersion. The core idea is to use the conformal normal curvature of Poon and Poon (1999) doi:10.1111/1467-9868.00162 as a non-conformity score within a split-conformal testing procedure, yielding per-observation conformal p-values whose Benjamini-Hochberg adjustment controls the false discovery rate at a user-specified level (Bates and others, 2023) doi:10.1214/22-AOS2244. Unlike classical local influence diagnostics, which rely on visual inspection of index plots and do not scale beyond a few hundred observations, 'clis' provides a finite-sample error guarantee and runs in linear time per observation after a single model fit. Methods for four perturbation schemes, block decomposition of influence into the inflation-probability and conditional-mean/precision components, penalised additive (semiparametric) submodels, and a full suite of diagnostic plots are included.

Changes in 0.3.6

tests/testthat/test-screening.R: the helper that plants outliers drew responses from rBEZI() without clamping them strictly below one, so gamlss rejected the response with "response variable out of range" and two screening tests failed. The clamp applied to the simulation scripts in 0.2.3 is now applied here too.
New data-raw/ directory with the scripts that regenerate every table and figure of the accompanying paper, and a runbook in data-raw/README.md.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("clis", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Raydonal/clis")

Development version from Raydonal/clis. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-clis

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-clis

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-clis

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.3 min · r-oldrel-windows-x86_64

Status changes

OK13 OKNow
OK6 OK2026-09-30

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.3.6

READMEYes · 258 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · mentions 0.3.6Citation fileNoWebsiteYes · pkgdown

Help pages: 21 (1 internal)includes a package overview page
Examples that run: 75%3 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 20%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 14%

Vignettes (1)

Conformal Local Influence Screening with clis HTML

How these are measured

Downloads

269

CRAN downloads in the past year

Rank #25,422 · ~1/day · ~22/mo

Releases R versions

Daily download trend is not available in this view yet.

26930 days

26990 days

2691 year

Compare downloads with other packages →

Also on4 r2u9 autocran

How downloads are counted

Repository

raydonal/clis ↗Account: Raydonal

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2026-09-19

Responsiveness

not measured

How these are measured

PracticesBeta

6 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/raydonal/clis on 2026-10-21.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (3)

pkgdown

GitHub Pages site last deployed 2026-09-19 · The repository has a site deploy workflow

CRAN release process (1)

cran-comments.md

How this is detected·Detection ruleset v4 (2026-10-20)

AI coding toolsBeta

This repository shows signs of AI coding tools.

Claude Codefirst seen 2026-09-17
Commits: at least 5 crediting it in the message

Models named in its commits

Claude Sonnet 55 commits · Sep 2026

Counts are commits, not lines of code. Commits by a tool's accounts count once across all of its accounts. Commits crediting it are the largest count among its credit lines, a minimum.How this is detected·Detection ruleset v4 (updated 2026-09-27)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing clis adds 3 packages (2 with compiled code, 2.7 MB of source tarballs). Heaviest: gamlss.dist 1.5 MB, gamlss.data 928 KB, gamlss 312 KB.

Depends (1)

R >= 4.1.0

Imports (6)

gamlss gamlss.diststatsgraphicsgrDevicesutils

LinkingTo (0)

none

Suggests (6)

testthat knitr rmarkdown ggplot2 betareg gamlss.data

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Raydonal Ospina

Author, Maintainer since 0.3.6 (2026)

Releases (1)

0.3.6Latest
record
2026-09-29 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-09-29
Total releases: 1 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.1.0
Download size: 149 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("clis")

Format

Ospina, R. (2026). clis: Conformal Local Influence Screening for Bounded-Response Regression (Version 0.3.6) [Computer software]. https://doi.org/10.32614/CRAN.package.clis

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for clis version 0.3.6 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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