R Observatory: Metrics for clipp version 1.2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

clipp

1.2.0Package record

Calculating Likelihoods by Pedigree Paring

1packages depend

3.5Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by James DowtyCRAN page ↗

A fast and general implementation of the Elston-Stewart algorithm that can calculate the likelihoods of large and complex pedigrees. References for the Elston-Stewart algorithm are Elston & Stewart (1971) doi:10.1159/000152448, Lange & Elston (1975) doi:10.1159/000152714 and Cannings et al. (1978) doi:10.2307/1426718.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("clipp", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-clipp

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-clipp

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-clipp

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.9 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.2.0

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 14includes a package overview page
Examples that run: 100%9 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 50%

Vignettes (1)

using_clipp HTML

How these are measured

Downloads

3.5K

CRAN downloads in the past year

Rank #12,050 · ~10/day · ~289/mo

Releases R versions

Daily download trend is not available in this view yet.

35130 days

90690 days

3.5K1 year

Compare downloads with other packages →

Also on103 r2u16 autocran

How downloads are counted

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Installing clipp adds no packages beyond those that come with R.

Depends (1)

R >= 3.5.0

Imports (0)

none

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Imports 1

Depends, Imports or LinkingTo, most downloaded first

penetrance

How these are counted

Code & Tests

Datasets

People & History

People (2)

James Dowty

Author, Maintainer since 0.1.0 (2020)

Kevin Wong

Author

Releases (6)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.2.0Latest
record
2022-07-12 · current release · diff ↗
1.1.1
record
2022-07-12 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.1.0
record
2021-09-07 · diff ↗
1.0.1
record
2021-07-15 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.0.0
record
2021-05-05 · diff ↗ ·
removed 1 export
geno_freq_HWE

added 6 exports
combine_loci, geno_freq_monogenic, geno_freq_phased, geno_freq_polygenic, trans_phased, trans_polygenic
0.1.0
record
2020-07-06
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-07-06
Total releases: 6 / 6 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 93 KB / 4 files
Download size: 154 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("clipp")

Format

Dowty, J., & Wong, K. (2026). clipp: Calculating Likelihoods by Pedigree Paring (Version 1.2.0) [Computer software]. https://doi.org/10.32614/CRAN.package.clipp

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for clipp version 1.2.0 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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