R Observatory: Metrics for clintools version 0.9.10.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

clintools

0.9.10.1Package record

Tools for Clinical Research

0packages depend

4.2Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Markus Harboe OlsenCRAN page ↗GitHub ↗Issues ↗

Every research team have their own script for data management, statistics and most importantly hemodynamic indices. The purpose is to standardize scripts utilized in clinical research. The hemodynamic indices can be used in a long-format dataframe, and add both periods of interest (trigger-periods), and delete artifacts with deleter-files. Transfer function analysis (Claassen et al. (2016) doi:10.1177/0271678X15626425) and Mx (Czosnyka et al. (1996) doi:10.1161/01.str.27.10.1829) can be calculated using this package.

Changes in 0.9.10.1

Bug fixed of cdm.fig and cdm.miss

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("clintools", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("lilleoel/clintools")

Development version from lilleoel/clintools. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-clintools

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-clintools

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-clintools

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.2 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.9.10.1

READMEYes · 100 wordsVignettesNoNEWSYes · 33% structured · mentions 0.9.10.1Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 24
Examples that run: 50%12 run in a plain check · 12 never run
Exported functions with examples: 100%
Documented parameters: 96%
Return-value docs: 100%
Help pages citing references: 33%

How these are measured

Downloads

4.2K

CRAN downloads in the past year

Rank #8,120 · ~12/day · ~350/mo

Releases R versions

Daily download trend is not available in this view yet.

47730 days

1.1K90 days

4.2K1 year

Compare downloads with other packages →

Also on99 r2u11 autocran

How downloads are counted

Repository

lilleoel/clintools ↗Account: lilleoel

2Stars

1Forks

0Open issues

0Open PRs

7Releases

168Commits

1Commit identities

168 commits · Last activity 2026-10-03 · 0% stars, 30d · Default branch at 0.9.10.6, ahead of CRAN 0.9.10.1 (checked 2026-10-18)

Responsiveness

How these are sampled

PRs merged (all time): not measured
Median days to close, 50 most recently updated closed issues: 154
Median days to close, 50 most recently updated closed PRs: not measured

Stars over time

2024-03-14 · 22026-07-07 · 2

How these are measured

PracticesBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/lilleoel/clintools on 2026-10-18.

Continuous integration (1)

Travis CI (config file)

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Installing clintools adds 45 packages (25 with compiled code, 45 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, lme4 4.1 MB.

Depends (1)

R >= 3.5.0

Imports (13)

signal xml2 lme4 ggplot2 pROC irr nlme (>= 3.1-160)parameters stringi scales dplyrsurvivalpander (>= 0.6.5)

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (6)

Markus Harboe Olsen

Maintainer since 0.8.0 (2021), Author

Ronan Berg

Contributor

Janus Christian Jakobsen

Contributor · added in 0.9.3

Aksel Karl Georg Jensen

Contributor · added in 0.9.3

Kirsten Moeller

Contributor

Christian Riberholt

Contributor

Releases (16)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.9.10.1Latest
record
2023-12-11 · current release · diff ↗ ·
removed 1 export
cols

added 1 export
cdm.fig
0.9.10
record
2023-12-05 · diff ↗ ·
removed 1 export
cdm.fig

added 3 exports
cols, comparerel, questionaire
0.9.9
record
2023-08-21 · diff ↗ ·
added 3 exports
cdm.fig, cdm.miss, quietly
0.9.8
record
2023-07-01 · diff ↗ ·
added 5 exports
calcrel, danishcpr, recol, rowMedians, tbl
R
R 4.3.0 released · 2023-04-21
0.9.7
record
2022-11-22 · diff ↗
0.9.6
record
2022-07-13 · diff ↗
0.9.5
record
2022-07-07 · diff ↗
0.9.4
record
2022-06-22 · diff ↗ ·
added 1 export
dilations
R
R 4.2.0 released · 2022-04-22
0.9.3
record
2022-02-13 · diff ↗
0.9.2
record
2022-01-20 · diff ↗
0.9.1
record
2022-01-19 · diff ↗

Show 7 earlier eventsHide 7 earlier events

0.9.0
record
2022-01-09 · diff ↗ ·
added 3 exports
PLR3000, rrGcomp, sRCT
0.8.5
record
2021-08-06 · diff ↗ ·
added 1 export
iscus
0.8.2
record
2021-06-30 · diff ↗
0.8.1
record
2021-06-01 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.8.0
record
2021-05-17
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-05-17
Total releases: 16 / 5 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Bundled data: 437 KB / 2 files
Download size: 497 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("clintools")

Format

Olsen, M. H., Berg, R., Jakobsen, J. C., Jensen, A. K. G., Moeller, K., & Riberholt, C. (2023). clintools: Tools for Clinical Research (Version 0.9.10.1) [Computer software]. https://doi.org/10.32614/CRAN.package.clintools

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for clintools version 0.9.10.1 [Data set]. HJJB, LLC. Data release v2026-10-20. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-20, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →