R Observatory: Metrics for clinDR version 2.5.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

clinDR

2.5.2

Simulation and Analysis Tools for Clinical Dose Response Modeling

2packages depend

3.7Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Neal ThomasFirst published 2017-12-049 releasesCRAN page ↗

Bayesian and ML Emax model fitting, graphics and simulation for clinical dose response. The summary data from the dose response meta-analyses in Thomas, Sweeney, and Somayaji (2014) doi:10.1080/19466315.2014.924876 and Thomas and Roy (2016) doi:10.1080/19466315.2016.1256229 Wu, Banerjee, Jin, Menon, Martin, and Heatherington(2017) doi:10.1177/0962280216684528 are included in the package. The prior distributions for the Bayesian analyses default to the posterior predictive distributions derived from these references.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("clinDR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-clindr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-clinDR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-clinDR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 4.3 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

17

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 70%
Documented parameters: 81%
Return-value docs: 83%
References docs: 14%

Downloads

3.7K

CRAN downloads in the past year

Rank #11,088 · ~10/day · ~305/mo

Releases R versions

Daily download trend is not available in this view yet.

23230 days

88690 days

3.7K1 year

Compare downloads with other packages →

Also on152 r2u23 autocran18 c2d4u

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (3)

R >= 3.5.0rstan shiny

Imports (15)

foreachgraphicsDoseFindingstatsmvtnormutilsparalleldoParallel ggplot2 tidyr purrr tibble dplyr glue waiter

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

0indirect

ememax BayesianMCPMod

Code & Tests

People & History

People (3)

Maintainer (1)

Neal Thomas

Author, Maintainer

Authors (3)

Neal Thomas

Author, Maintainer

Mike K. Smith

Author · added in 2.3.5

Jing Wu

Author

Package Timeline

9 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
2.5.2Latest
2025-10-02 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
2.4.1
2023-08-09 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
2.3.5
2021-04-12 · diff ↗
2.3
2020-07-01 · diff ↗
R
R 4.0.0 released · 2020-04-24
2.2.1
2019-12-17 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.9
2019-01-04 · diff ↗
1.8
2018-05-05 · diff ↗
R
R 3.5.0 released · 2018-04-23

Show 3 earlier events

1.7
2018-02-19 · diff ↗
1.6
2017-12-04
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-12-04
Total releases: 9 / 9 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.5.0
Bundled data: 78 KB / 1 file
Download size: 1.7 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Analysis of Pharmacokinetic Data

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("clinDR")

Format

Thomas, N., Smith, M. K., & Wu, J. (2025). clinDR: Simulation and Analysis Tools for Clinical Dose Response Modeling (Version 2.5.2) [Computer software]. https://doi.org/10.32614/CRAN.package.clinDR

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for clinDR version 2.5.2 [Data set]. HJJB, LLC. Data release v2026-08-17. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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