R Observatory: Metrics for citcdf version 1.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

citcdf

1.1.0

Conditional Independence Testing with Cumulative Distribution Functions

0packages depend

42downloads / year

85.1%test coverage

10/10checks pass

Overview

About

Maintained by Boris P. HejblumFirst published 2026-08-211 releasesCRAN page ↗GitHub ↗

Complex hypothesis testing through conditional cumulative distribution function estimation. Method is detailed in: Gauthier M, Agniel D, Thiébaut R & Hejblum BP (2021). "Distribution-free complex hypothesis testing for single-cell RNA-seq differential expression analysis", bioRxiv doi:10.1101/2021.05.21.445165.

Install

R (CRAN)pak (dev)Fedora (COPR)

install.packages("citcdf", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("sistm/citcdf")

Development version from sistm/citcdf. Installs pak first if it is not already available.

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-citcdf

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

10OK

Slowest check: 6.3 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.34

85.1%

Coverage · measured lines

100%

Documentation · exports

7

Dependencies · direct

Check history

OK2026-08-22
7 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 184 wordsVignettesNopkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 89%
Return-value docs: 100%
References docs: 55%

Downloads

42

CRAN downloads in the past year

Rank #24,899 · ~0/day · ~4/mo

citcdf Releases R versions

Daily download trend is not available in this view yet.

4230 days

4290 days

421 year

Compare downloads with other packages →

Repository

GitHub ↗ sistm/citcdf

2Stars

1Forks

1Open issues

1Open PRs

0Releases

343Commits

4Contributors

License GPL-3.0 · 343 commits · Last activity 2026-08-22

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/sistm/citcdf on 2026-08-23.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

16 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1

Imports (7)

ggplot2 pbapplyparallelpatchwork RcppNumerical survey viridisLite

LinkingTo (0)

none

Suggests (10)

BiocSet bnlearn GSA knitr quarto reactable rmarkdown sessioninfo SeuratObject testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (6)

Maintainer (1)

Boris P. Hejblum

Author, Maintainer, Copyright holder

Authors (4)

Boris P. Hejblum

Author, Maintainer, Copyright holder

Denis Agniel

Author

Sara Fallet

Author

Marine Gauthier

Author

Contributors (2)

Kalidou Ba

Contributor

Pierre Neuvial

Contributor

Copyright holders (1)

Boris P. Hejblum

Author, Maintainer, Copyright holder

Package Timeline

1 release. R releases are shown for context.

1.1.0Latest
2026-08-21 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-08-21
Total releases: 1 / 1 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 4.1
Download size: 539 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("citcdf")

Format

Hejblum, B. P., Agniel, D., Ba, K., Fallet, S., Gauthier, M., & Neuvial, P. (2026). citcdf: Conditional Independence Testing with Cumulative Distribution Functions (Version 1.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.citcdf

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for citcdf version 1.1.0 [Data set]. HJJB, LLC. Data release v2026-08-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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