cinaR
A Computational Pipeline for Bulk 'ATAC-Seq' Profiles
v0.2.6
·
Feb 4, 2026
·
GPL-3
Description
Differential analyses and Enrichment pipeline for bulk 'ATAC-seq' data analyses. This package combines different packages to have an ultimate package for both data analyses and visualization of 'ATAC-seq' data. Methods are described in 'Karakaslar et al.' (2021) <doi:10.1101/2021.03.05.434143>.
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Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
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r-oldrel-macos-arm64
package dependencies
Packages suggested but not available for checking: 'ChIPseeker', 'TxDb.Hsapiens.UCSC.hg38.knownGene', 'TxDb.Mmusculus.UCSC.mm10.knownGene'
NOTE
r-oldrel-macos-x86_64
package dependencies
Packages suggested but not available for checking: 'ChIPseeker', 'TxDb.Hsapiens.UCSC.hg38.knownGene', 'TxDb.Hsapiens.UCSC.hg19.knownGene', 'TxDb.Mmusculus.UCSC.mm10.knownGene'
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NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE
r-oldrel-macos-arm64
package dependencies
Packages suggested but not available for checking: 'ChIPseeker', 'TxDb.Hsapiens.UCSC.hg38.knownGene', 'TxDb.Mmusculus.UCSC.mm10.knownGene'
NOTE
r-oldrel-macos-x86_64
package dependencies
Packages suggested but not available for checking: 'ChIPseeker', 'TxDb.Hsapiens.UCSC.hg38.knownGene', 'TxDb.Hsapiens.UCSC.hg19.knownGene', 'TxDb.Mmusculus.UCSC.mm10.knownGene'